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Report for CCDS8393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8393.1 Public Homo sapiens 11 MPZL2 24 110 108 CCDS HistoryNCBI Gene:10205Re-query CCDS DB by CCDS ID:8393.1Re-query CCDS DB by GeneID:10205See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278937.7 ENSP00000278937.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278937.7Link to Ensembl Protein Viewer:ENSP00000278937.2Re-query CCDS DB by Nucleotide ID:ENST00000278937Re-query CCDS DB by Protein ID:ENSP00000278937
Original member Current member EBI ENST00000438295.2 ENSP00000408362.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438295.2Link to Ensembl Protein Viewer:ENSP00000408362.2Re-query CCDS DB by Nucleotide ID:ENST00000438295Re-query CCDS DB by Protein ID:ENSP00000408362
Original member Current member NCBI NM_005797.4 NP_005788.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005797.4Link to Protein Sequence:NP_005788.1Re-query CCDS DB by Nucleotide ID:NM_005797Re-query CCDS DB by Protein ID:NP_005788Link to BLAST:NP_005788.1
Original member Current member NCBI NM_144765.3 NP_658911.1 Accepted alive Link to Nucleotide Sequence:NM_144765.3Link to Protein Sequence:NP_658911.1Re-query CCDS DB by Nucleotide ID:NM_144765Re-query CCDS DB by Protein ID:NP_658911Link to BLAST:NP_658911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005788.1 215 O60487 215 100% 0 0
NP_658911.1 215 O60487 215 100% 0 0

Chromosomal Locations for CCDS 8393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118257250 118257313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118260054 118260201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118262438 118262648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118262931 118263097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118264096 118264153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGTATGGCAAGAGCTCTACTCGTGCGGTGCTTCTTCTCCTTGGCATACAGCTCACAGCTCTTTGGCCTA
TAGCAGCTGTGGAAATTTATACCTCCCGGGTGCTGGAGGCTGTTAATGGGACAGATGCTCGGTTAAAATG
CACTTTCTCCAGCTTTGCCCCTGTGGGTGATGCTCTAACAGTGACCTGGAATTTTCGTCCTCTAGACGGG
GGACCTGAGCAGTTTGTATTCTACTACCACATAGATCCCTTCCAACCCATGAGTGGGCGGTTTAAGGACC
GGGTGTCTTGGGATGGGAATCCTGAGCGGTACGATGCCTCCATCCTTCTCTGGAAACTGCAGTTCGACGA
CAATGGGACATACACCTGCCAGGTGAAGAACCCACCTGATGTTGATGGGGTGATAGGGGAGATCCGGCTC
AGCGTCGTGCACACTGTACGCTTCTCTGAGATCCACTTCCTGGCTCTGGCCATTGGCTCTGCCTGTGCAC
TGATGATCATAATAGTAATTGTAGTGGTCCTCTTCCAGCATTACCGGAAAAAGCGATGGGCCGAAAGAGC
TCATAAAGTGGTGGAGATAAAATCAAAAGAAGAGGAAAGGCTCAACCAAGAGAAAAAGGTCTCTGTTTAT
TTAGAAGACACAGACTAA

Translation (215 aa):
MYGKSSTRAVLLLLGIQLTALWPIAAVEIYTSRVLEAVNGTDARLKCTFSSFAPVGDALTVTWNFRPLDG
GPEQFVFYYHIDPFQPMSGRFKDRVSWDGNPERYDASILLWKLQFDDNGTYTCQVKNPPDVDGVIGEIRL
SVVHTVRFSEIHFLALAIGSACALMIIIVIVVVLFQHYRKKRWAERAHKVVEIKSKEEERLNQEKKVSVY
LEDTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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