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Report for CCDS83947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83947.1 Public Mus musculus 11 Cenpx 23 108 98 CCDS HistoryNCBI Gene:20892Re-query CCDS DB by CCDS ID:83947.1Re-query CCDS DB by GeneID:20892See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83947.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106154.7 ENSMUSP00000101760.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106154.7Link to Ensembl Protein Viewer:ENSMUSP00000101760.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106154Re-query CCDS DB by Protein ID:ENSMUSP00000101760
Original member NCBI NM_001347612.1 NP_001334541.1 Updated not alive Link to Nucleotide Sequence:NM_001347612.1Link to Protein Sequence:NP_001334541.1Re-query CCDS DB by Nucleotide ID:NM_001347612Re-query CCDS DB by Protein ID:NP_001334541
Current member NCBI NM_001347612.2 NP_001334541.1 Accepted alive Link to Nucleotide Sequence:NM_001347612.2Link to Protein Sequence:NP_001334541.1Re-query CCDS DB by Nucleotide ID:NM_001347612Re-query CCDS DB by Protein ID:NP_001334541Link to BLAST:NP_001334541.1

Chromosomal Locations for CCDS 83947.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120711292 120711306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120711390 120711478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120711703 120711756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120711844 120711895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120712440 120712574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGGCTCACCTTTGGTGCTCTCACGGGATTCCTAGGCCTCTGGATTCTCCCTCTCATCTCCACCTCACAA
ACTACCACCAACCTTTCAGTTCTCAAGCCATTCCAGATGCCTGGCCAATCTGCCGCCACCACCTGGAACT
GGTGAGCAGACTACTCCATTTGCACTTCAGGGATTGCAAGACCAAAGTCAGCGGGGATGCACTGCAGCTC
ATGGCGGAGTTCCTGAGGATCTTCGTACTAGAGGCTGCTGTCCGTGGGGTCTGGCAGGCCCAGGCAGAAG
ACCTGGATGTTGTGGAAGTGGATCAGCTGGAGAAAGTGCTCCCTCAGCTGCTCCTGGACTTCTAG

Translation (114 aa):
MAHLWCSHGIPRPLDSPSHLHLTNYHQPFSSQAIPDAWPICRHHLELVSRLLHLHFRDCKTKVSGDALQL
MAEFLRIFVLEAAVRGVWQAQAEDLDVVEVDQLEKVLPQLLLDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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