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Report for CCDS84004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84004.1 Public Mus musculus 12 Mta1 23 108 98 CCDS HistoryNCBI Gene:116870Re-query CCDS DB by CCDS ID:84004.1Re-query CCDS DB by GeneID:116870See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 84004.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109727.8 ENSMUSP00000105349.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109727.8Link to Ensembl Protein Viewer:ENSMUSP00000105349.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109727Re-query CCDS DB by Protein ID:ENSMUSP00000105349
Original member Current member NCBI NM_001346696.1 NP_001333625.1 Accepted alive Link to Nucleotide Sequence:NM_001346696.1Link to Protein Sequence:NP_001333625.1Re-query CCDS DB by Nucleotide ID:NM_001346696Re-query CCDS DB by Protein ID:NP_001333625Link to BLAST:NP_001333625.1

Chromosomal Locations for CCDS 84004.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113098418 113098445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113112146 113112213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113116988 113117081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113120211 113120261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113120827 113120953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113121023 113121086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113123117 113123234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113126775 113126877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113127615 113127714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113128032 113128220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113130120 113130194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113130534 113130592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113130885 113131000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113131316 113131467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113131573 113131762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113131888 113131977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113133185 113133337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113135797 113135828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113136281 113136432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113136518 113136668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGGCCGCCAACATGTACAGGGTCGGAGACTATGTCTACTTTGAGAACTCCTCCAGCAACCCGTACCTGA
TCCGCAGGATTGAAGAGCTTAACAAGACAGCCAACGGGAATGTGGAGGCCAAAGTGGTGTGTTTCTACAG
AAGGCGGGACATTTCCAGCAGCCTCATCGCGCTGGCGGACAAGCATGCAACCCTGTCAGTCTGCTATAGA
GCCGGACCGGGGGCGGACACCGGCGAGGAAGGGGAAGTGGAGGAGGAGGTAGAAAACCCAGAGATGGTGG
ACCTGCCTGAGAAACTTAAGCATCAGCTGCGGCATCGAGAACTGTTCCTGTCTCGGCAGTTGGAGTCTCT
GCCTGCCACCCACATCAGGGGCAAGTGCAGTGTTACCCTGCTCAATGAGACGGAGTCACTCAAGTCCTAC
TTGGAGCGTGAGGATTTCTTCTTCTACTCTCTAGTCTACGACCCACAGCAGAAGACCCTCCTGGCTGATA
AAGGGGAAATTCGTGTAGGAAACCGGTACCAGGCTGACATCACTGACTTGCTGAAAGAAGGTGAGGAGGA
CGGCCGCGATCAGTCAAAACTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTGGATAAGCAGATT
GACCAGTTTCTGGTGGTGGCCCGCTCTGTGGGTACCTTTGCACGGGCCCTGGATTGCAGCAGCTCCGTGC
GGCAGCCTAGCCTGCACATGAGTGCCGCAGCGGCCTCCCGAGACATCACCCTGTTCCATGCTATGGACAC
GCTGCACAAGAACATCTACGACATCTCCAAGGCCATCTCGGCCCTCGTGCCCCAGGGTGGGCCAGTGCTC
TGCCGCGATGAGATGGAGGAGTGGTCCGCATCAGAAGCCAACCTTTTTGAGGAAGCTCTGGAAAAATATG
GGAAAGATTTCACCGACATTCAACAAGATTTTCTCCCATGGAAGTCGCTCACCAGCATCATTGAGTATTA
CTACATGTGGAAGACCACCGACAGATACGTCCAGCAGAAACGCTTGAAAGCAGCTGAAGCTGAGAGCAAG
TTAAAGCAGGTTTATATTCCCAACTATAACAAGCCCAACCCAAACCAGATCAGCGCCAGCAGTGTCAAGG
CCACTGTAGTGAATGGCACAGGGACACCAGGCCAGAGCCCCGGGGCCGGTCGGGCCTGCGAGAGCTGTTA
CACCACACAGTCTTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAGTGTCGCCTCTGCGCATCTTGT
TGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATGGAGAGAGGCCGGGACCAA
ACCGCAATAACATGAGTCCCCATGGCATCCCAGCTCGGAGCAGTGGGAGCCCCAAGTTTGCCATGAAGAC
AAGGCAGGCCTTCTACCTGCATACTACCAAGTTGACACGCATTGCCCGGCGCTTGTGCCGTGAGATCCTA
CGCCCATGGCATGCTGCCCGCCACCCCTACATGCCCATCAACAGCGCAGCAATCAAGGCTGAATGCACAG
CACGGCTGCCCGAAGCCTCCCAGAGCCCACTGGTGCTGAAGCAGGTAGTACGGAAGCCCCTGGAGGCCGT
GCTCCGGTATCTTGAGACCCATCCCCGCCCGCCTAAGCCCGACCCCGTGAAGAGTTCATCCAGTGTGCTC
AGCAGTCTGACCCCTGCCAAGTCAGCCCCTGTCATCAACAACGGCTCCCCTACCATCCTGGGCAAGAGGA
GCTACGAGCAGCACAATGGGGTAGATGGTCTGGCAAACCATGGACAGACCAGGCACATGGGACCAAGTCG
GAATCTCCTGCTCAATGGGAAGTCCTACCCCACCAAAGTGCGCCTAATCCGTGGTGGCTCCCTGCCTCCA
GTCAAGCGGCGGCGAATGAACTGGATCGACGCCCCAGATGATGTATTTTACATGGCCACCGAAGAGACCA
GGAAAATCCGAAAGCTGCTCTCATCCTCAGAAACCAAGCGTGCTGCCCGCCGGCCCTACAAACCCATTGC
CCTGCGCCAGAGCCAGGCCCTGCCGCTGCGGCCACCCCCACCTGCACCAGTCAATGATGAGCCCATTGTT
ATTGAGGACTAG

Translation (703 aa):
MAANMYRVGDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCFYRRRDISSSLIALADKHATLSVCYR
AGPGADTGEEGEVEEEVENPEMVDLPEKLKHQLRHRELFLSRQLESLPATHIRGKCSVTLLNETESLKSY
LEREDFFFYSLVYDPQQKTLLADKGEIRVGNRYQADITDLLKEGEEDGRDQSKLETKVWEAHNPLVDKQI
DQFLVVARSVGTFARALDCSSSVRQPSLHMSAAAASRDITLFHAMDTLHKNIYDISKAISALVPQGGPVL
CRDEMEEWSASEANLFEEALEKYGKDFTDIQQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRLKAAEAESK
LKQVYIPNYNKPNPNQISASSVKATVVNGTGTPGQSPGAGRACESCYTTQSYQWYSWGPPNMQCRLCASC
WTYWKKYGGLKMPTRLDGERPGPNRNNMSPHGIPARSSGSPKFAMKTRQAFYLHTTKLTRIARRLCREIL
RPWHAARHPYMPINSAAIKAECTARLPEASQSPLVLKQVVRKPLEAVLRYLETHPRPPKPDPVKSSSSVL
SSLTPAKSAPVINNGSPTILGKRSYEQHNGVDGLANHGQTRHMGPSRNLLLNGKSYPTKVRLIRGGSLPP
VKRRRMNWIDAPDDVFYMATEETRKIRKLLSSSETKRAARRPYKPIALRQSQALPLRPPPPAPVNDEPIV
IED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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