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Report for CCDS84043.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84043.1 Public Mus musculus 13 Mef2c 23 108 98 CCDS HistoryNCBI Gene:17260Re-query CCDS DB by CCDS ID:84043.1Re-query CCDS DB by GeneID:17260See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84043.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197146.4 ENSMUSP00000143227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197146.4Link to Ensembl Protein Viewer:ENSMUSP00000143227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197146Re-query CCDS DB by Protein ID:ENSMUSP00000143227
Original member Current member EBI ENSMUST00000197681.4 ENSMUSP00000143420.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197681.4Link to Ensembl Protein Viewer:ENSMUSP00000143420.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197681Re-query CCDS DB by Protein ID:ENSMUSP00000143420
Original member NCBI NM_001347571.1 NP_001334500.1 Updated not alive Link to Nucleotide Sequence:NM_001347571.1Link to Protein Sequence:NP_001334500.1Re-query CCDS DB by Nucleotide ID:NM_001347571Re-query CCDS DB by Protein ID:NP_001334500
Current member NCBI NM_001347571.2 NP_001334500.1 Accepted alive Link to Nucleotide Sequence:NM_001347571.2Link to Protein Sequence:NP_001334500.1Re-query CCDS DB by Nucleotide ID:NM_001347571Re-query CCDS DB by Protein ID:NP_001334500Link to BLAST:NP_001334500.1
Original member NCBI NM_001347572.1 NP_001334501.1 Updated not alive Link to Nucleotide Sequence:NM_001347572.1Link to Protein Sequence:NP_001334501.1Re-query CCDS DB by Nucleotide ID:NM_001347572Re-query CCDS DB by Protein ID:NP_001334501
Current member NCBI NM_001347572.2 NP_001334501.1 Accepted alive Link to Nucleotide Sequence:NM_001347572.2Link to Protein Sequence:NP_001334501.1Re-query CCDS DB by Nucleotide ID:NM_001347572Re-query CCDS DB by Protein ID:NP_001334501Link to BLAST:NP_001334501.1
Original member NCBI NM_001347573.1 NP_001334502.1 Updated not alive Link to Nucleotide Sequence:NM_001347573.1Link to Protein Sequence:NP_001334502.1Re-query CCDS DB by Nucleotide ID:NM_001347573Re-query CCDS DB by Protein ID:NP_001334502
Current member NCBI NM_001347573.2 NP_001334502.1 Accepted alive Link to Nucleotide Sequence:NM_001347573.2Link to Protein Sequence:NP_001334502.1Re-query CCDS DB by Nucleotide ID:NM_001347573Re-query CCDS DB by Protein ID:NP_001334502Link to BLAST:NP_001334502.1
Original member NCBI NM_001347574.1 NP_001334503.1 Updated not alive Link to Nucleotide Sequence:NM_001347574.1Link to Protein Sequence:NP_001334503.1Re-query CCDS DB by Nucleotide ID:NM_001347574Re-query CCDS DB by Protein ID:NP_001334503
Current member NCBI NM_001347574.2 NP_001334503.1 Accepted alive Link to Nucleotide Sequence:NM_001347574.2Link to Protein Sequence:NP_001334503.1Re-query CCDS DB by Nucleotide ID:NM_001347574Re-query CCDS DB by Protein ID:NP_001334503Link to BLAST:NP_001334503.1
Original member NCBI NM_001347575.1 NP_001334504.1 Updated not alive Link to Nucleotide Sequence:NM_001347575.1Link to Protein Sequence:NP_001334504.1Re-query CCDS DB by Nucleotide ID:NM_001347575Re-query CCDS DB by Protein ID:NP_001334504
Current member NCBI NM_001347575.2 NP_001334504.1 Accepted alive Link to Nucleotide Sequence:NM_001347575.2Link to Protein Sequence:NP_001334504.1Re-query CCDS DB by Nucleotide ID:NM_001347575Re-query CCDS DB by Protein ID:NP_001334504Link to BLAST:NP_001334504.1
Original member NCBI NM_001347576.1 NP_001334505.1 Updated not alive Link to Nucleotide Sequence:NM_001347576.1Link to Protein Sequence:NP_001334505.1Re-query CCDS DB by Nucleotide ID:NM_001347576Re-query CCDS DB by Protein ID:NP_001334505
Current member NCBI NM_001347576.2 NP_001334505.1 Accepted alive Link to Nucleotide Sequence:NM_001347576.2Link to Protein Sequence:NP_001334505.1Re-query CCDS DB by Nucleotide ID:NM_001347576Re-query CCDS DB by Protein ID:NP_001334505Link to BLAST:NP_001334505.1
Original member NCBI NM_001347577.1 NP_001334506.1 Updated not alive Link to Nucleotide Sequence:NM_001347577.1Link to Protein Sequence:NP_001334506.1Re-query CCDS DB by Nucleotide ID:NM_001347577Re-query CCDS DB by Protein ID:NP_001334506
Current member NCBI NM_001347577.2 NP_001334506.1 Accepted alive Link to Nucleotide Sequence:NM_001347577.2Link to Protein Sequence:NP_001334506.1Re-query CCDS DB by Nucleotide ID:NM_001347577Re-query CCDS DB by Protein ID:NP_001334506Link to BLAST:NP_001334506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334500.1 442 Q8CFN5-3 442 100% 0 0
NP_001334501.1 442 Q8CFN5-3 442 100% 0 0
NP_001334502.1 442 Q8CFN5-3 442 100% 0 0
NP_001334503.1 442 Q8CFN5-3 442 100% 0 0
NP_001334504.1 442 Q8CFN5-3 442 100% 0 0
NP_001334505.1 442 Q8CFN5-3 442 100% 0 0
NP_001334506.1 442 Q8CFN5-3 442 100% 0 0

Chromosomal Locations for CCDS 84043.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 83575677 83575730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83592778 83592981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83625265 83625408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83633055 83633241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83635422 83635469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83652814 83652986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83654598 83654621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83655507 83655636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83656217 83656352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83662403 83662631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGGGAGAAAAAAGATTCAGATTACGAGGATAATGGATGAGCGTAACAGACAGGTGACTTTTACGAAGA
GGAAATTTGGATTGATGAAGAAGGCTTATGAGCTGAGCGTGCTGTGCGACTGTGAGATTGCACTGATCAT
CTTCAACAGCACCAACAAGCTGTTCCAGTACGCCAGCACTGACATGGATAAGGTGTTGCTCAAGTACACC
GAGTACAACGAGCCGCACGAGAGCCGGACAAACTCAGACATTGTGGAGACATTGAGAAAGAAGGGCCTCA
ATGGCTGTGACAGCCCAGATCCCGATGCAGACGATTCAGTAGGTCACAGCCCTGAGTCTGAGGACAAGTA
CAGGAAAATTAACGAAGATATTGATCTAATGATCAGCAGGCAAAGATTGTGTGCTGTTCCACCTCCCAGC
TTTGAGATGCCAGTTACCATCCCAGTGTCCAGCCATAACAGTTTGGTGTACAGCAATCCTGTCAGCACAC
TGGGAAACCCCAATCTTCTGCCACTGGCCCACCCGTCTCTGCAGAGGAATAGTATGTCTCCTGGTGTAAC
ACATAGACCTCCAAGTGCAGGTAACACAGGCGGTCTGATGGGCGGAGATCTGACATCCGGTGCAGGCACC
AGCGCAGGGAATGGATACGGCAACCCCCGGAACTCACCAGGCCTGCTGGTCTCACCTGGTAACCTGAACA
AGAATATACAAGCCAAATCTCCTCCCCCTATGAATCTAGGAATGAATAATCGTAAGCCAGATCTCCGCGT
TCTTATCCCACCTGGCAGCAAGAACACGATGCCATCAGTGTCTGAGGATGTGGATCTGCTGTTGAATCAA
AGGATAAATAACTCCCAGTCGGCTCAGTCATTGGCTACCCCGGTGGTTTCCGTAGCAACTCCTACTTTAC
CAGGACAAGGAATGGGAGGATATCCATCAGCCATTTCAACAACATATGGTACTGAGTACTCTCTGAGTAG
CGCAGATCTGTCATCTCTGTCTGGCTTCAACACTGCCAGTGCGCTCCACCTCGGCTCTGTAACTGGCTGG
CAGCAGCAGCACCTACATAACATGCCGCCATCTGCCCTCAGTCAGTTGGGAGACCGTACCACCACCCCTT
CGAGATACCCACAACACACCACGCGCCACGAGGCGGGGAGGTCTCCTGTTGACAGCTTGAGCAGCTGTAG
CAGTTCCTACGATGGGAGCGACCGAGAGGATCACCGGAACGAATTCCACTCCCCCATTGGACTCACCAGA
CCTTCGCCGGACGAAAGGGAAAGTCCTTCAGTCAAGCGCATGCGACTCTCTGAAGGATGGGCAACATGA

Translation (442 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQRLCAVPPPS
FEMPVTIPVSSHNSLVYSNPVSTLGNPNLLPLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGT
SAGNGYGNPRNSPGLLVSPGNLNKNIQAKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLNQ
RINNSQSAQSLATPVVSVATPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGW
QQQHLHNMPPSALSQLGDRTTTPSRYPQHTTRHEAGRSPVDSLSSCSSSYDGSDREDHRNEFHSPIGLTR
PSPDERESPSVKRMRLSEGWAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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