NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS84045.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84045.1 Public Mus musculus 13 Mef2c 23 108 98 CCDS HistoryNCBI Gene:17260Re-query CCDS DB by CCDS ID:84045.1Re-query CCDS DB by GeneID:17260See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84045.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000185052.5 ENSMUSP00000138826.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185052.5Link to Ensembl Protein Viewer:ENSMUSP00000138826.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000185052Re-query CCDS DB by Protein ID:ENSMUSP00000138826
Original member NCBI NM_001347568.1 NP_001334497.1 Updated not alive Link to Nucleotide Sequence:NM_001347568.1Link to Protein Sequence:NP_001334497.1Re-query CCDS DB by Nucleotide ID:NM_001347568Re-query CCDS DB by Protein ID:NP_001334497
Current member NCBI NM_001347568.2 NP_001334497.1 Accepted alive Link to Nucleotide Sequence:NM_001347568.2Link to Protein Sequence:NP_001334497.1Re-query CCDS DB by Nucleotide ID:NM_001347568Re-query CCDS DB by Protein ID:NP_001334497Link to BLAST:NP_001334497.1
Original member NCBI NM_001347569.1 NP_001334498.1 Updated not alive Link to Nucleotide Sequence:NM_001347569.1Link to Protein Sequence:NP_001334498.1Re-query CCDS DB by Nucleotide ID:NM_001347569Re-query CCDS DB by Protein ID:NP_001334498
Current member NCBI NM_001347569.2 NP_001334498.1 Accepted alive Link to Nucleotide Sequence:NM_001347569.2Link to Protein Sequence:NP_001334498.1Re-query CCDS DB by Nucleotide ID:NM_001347569Re-query CCDS DB by Protein ID:NP_001334498Link to BLAST:NP_001334498.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334497.1 472 Q8CFN5-5 472 100% 0 0
NP_001334498.1 472 Q8CFN5-5 472 100% 0 0

Chromosomal Locations for CCDS 84045.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 83575677 83575730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83592778 83592981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83625470 83625607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83633055 83633241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83635422 83635469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83652814 83652986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83654598 83654621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83655507 83655636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83656217 83656352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 83662307 83662631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGGGAGAAAAAAGATTCAGATTACGAGGATAATGGATGAGCGTAACAGACAGGTGACTTTTACGAAGA
GGAAATTTGGATTGATGAAGAAGGCTTATGAGCTGAGCGTGCTGTGCGACTGTGAGATTGCACTGATCAT
CTTCAACAGCACCAACAAGCTGTTCCAGTACGCCAGCACTGACATGGATAAGGTGTTGCTCAAGTACACC
GAGTACAACGAGCCGCACGAGAGCCGGACAAACTCAGACATTGTGGAGGCATTGAACAAGAAAGAAAACA
AAGGCTCTGAAAGCCCCGATCCTGACTCCTCTTATGCACTCACCCCACGCACTGAAGAAAAATACAAAAA
AATTAATGAAGAATTTGATAATATGATCAAGAGTCATAAAATTCCTGCTGTTCCACCTCCCAGCTTTGAG
ATGCCAGTTACCATCCCAGTGTCCAGCCATAACAGTTTGGTGTACAGCAATCCTGTCAGCACACTGGGAA
ACCCCAATCTTCTGCCACTGGCCCACCCGTCTCTGCAGAGGAATAGTATGTCTCCTGGTGTAACACATAG
ACCTCCAAGTGCAGGTAACACAGGCGGTCTGATGGGCGGAGATCTGACATCCGGTGCAGGCACCAGCGCA
GGGAATGGATACGGCAACCCCCGGAACTCACCAGGCCTGCTGGTCTCACCTGGTAACCTGAACAAGAATA
TACAAGCCAAATCTCCTCCCCCTATGAATCTAGGAATGAATAATCGTAAGCCAGATCTCCGCGTTCTTAT
CCCACCTGGCAGCAAGAACACGATGCCATCAGTGTCTGAGGATGTGGATCTGCTGTTGAATCAAAGGATA
AATAACTCCCAGTCGGCTCAGTCATTGGCTACCCCGGTGGTTTCCGTAGCAACTCCTACTTTACCAGGAC
AAGGAATGGGAGGATATCCATCAGCCATTTCAACAACATATGGTACTGAGTACTCTCTGAGTAGCGCAGA
TCTGTCATCTCTGTCTGGCTTCAACACTGCCAGTGCGCTCCACCTCGGCTCTGTAACTGGCTGGCAGCAG
CAGCACCTACATAACATGCCGCCATCTGCCCTCAGTCAGTTGGGAGCTTGCACTAGCACTCATTTATCTC
AGAGTTCAAATCTCTCCCTGCCTTCTACTCAAAGCCTCAGCATCAAGTCAGAACCTGTTTCTCCTCCTAG
AGACCGTACCACCACCCCTTCGAGATACCCACAACACACCACGCGCCACGAGGCGGGGAGGTCTCCTGTT
GACAGCTTGAGCAGCTGTAGCAGTTCCTACGATGGGAGCGACCGAGAGGATCACCGGAACGAATTCCACT
CCCCCATTGGACTCACCAGACCTTCGCCGGACGAAAGGGAAAGTCCTTCAGTCAAGCGCATGCGACTCTC
TGAAGGATGGGCAACATGA

Translation (472 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVEALNKKENKGSESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHKIPAVPPPSFE
MPVTIPVSSHNSLVYSNPVSTLGNPNLLPLAHPSLQRNSMSPGVTHRPPSAGNTGGLMGGDLTSGAGTSA
GNGYGNPRNSPGLLVSPGNLNKNIQAKSPPPMNLGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLNQRI
NNSQSAQSLATPVVSVATPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGWQQ
QHLHNMPPSALSQLGACTSTHLSQSSNLSLPSTQSLSIKSEPVSPPRDRTTTPSRYPQHTTRHEAGRSPV
DSLSSCSSSYDGSDREDHRNEFHSPIGLTRPSPDERESPSVKRMRLSEGWAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH