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Report for CCDS84216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84216.1 Public Mus musculus 16 Tra2b 23 108 98 CCDS HistoryNCBI Gene:20462Re-query CCDS DB by CCDS ID:84216.1Re-query CCDS DB by GeneID:20462See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023564.9 ENSMUSP00000023564.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023564.9Link to Ensembl Protein Viewer:ENSMUSP00000023564.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000023564Re-query CCDS DB by Protein ID:ENSMUSP00000023564
Original member Current member NCBI NM_001330555.1 NP_001317484.1 Accepted alive Link to Nucleotide Sequence:NM_001330555.1Link to Protein Sequence:NP_001317484.1Re-query CCDS DB by Nucleotide ID:NM_001330555Re-query CCDS DB by Protein ID:NP_001317484Link to BLAST:NP_001317484.1

Chromosomal Locations for CCDS 84216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22246856 22246866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22247190 22247263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22248436 22248495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22249050 22249133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22250865 22250980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22252607 22252795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22254408 22254440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGTCTACTCGAAGGCGTCATGTTGGGAACCGGGCAAATCCTGACCCCAACTGTTGTCTTGGCGTGTTTG
GGTTGAGCTTATACACCACAGAAAGAGACCTAAGAGAAGTGTTCTCTAAATATGGCCCCATTGCTGATGT
GTCTATTGTATATGACCAGCAATCTAGACGTTCAAGAGGATTTGCCTTTGTATATTTTGAAAATGTAGAC
GATGCCAAGGAAGCTAAAGAACGTGCCAATGGAATGGAGCTTGATGGGCGTCGAATTAGAGTCGATTTCT
CTATAACAAAAAGGCCCCATACCCCAACACCAGGAATTTATATGGGGAGACCCACTTATGGCAGTTCTCG
CCGCCGAGACTATTATGACAGAGGGTACGATCGGGGTTATGATGACCGGGACTATTACAGCAGATCATAC
AGAGGAGGAGGTGGTGGAGGAGGTGGATGGAGAGCAGCTCAAGACAGGGATCAGATTTACAGAAGACGGT
CACCTTCTCCTTACTACAGTCGTGGAGGATACAGGTCACGTTCTCGATCACGATCCTACTCACCTCGTCG
CTACTAA

Translation (188 aa):
MSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD
DAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSY
RGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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