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Report for CCDS84220.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
84220.1 |
Public |
Mus musculus |
16 |
Nrros |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:224109](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:84220.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:224109](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86
Review status: Reviewed (by RefSeq and Havana)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 84220.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000099991.10 |
ENSMUSP00000097571.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000099991.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000097571.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000099991](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000097571](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000126869.1 |
ENSMUSP00000116388.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000126869.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000116388.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000126869](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000116388](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000143682.7 |
ENSMUSP00000119349.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000143682.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000119349.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000143682](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000119349](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001347181.1 |
NP_001334110.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001347181.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001334110.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001347181](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001334110](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001334110.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_146069.5 |
NP_666181.3 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_146069.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_666181.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_146069](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_666181](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_666181.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 84220.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2082 nt): ATGGAGTTCCCGCCCCTCTGGCTTTGCCTGGGTTTTCACTTCTTGATTGTGGAATGGAGGAGCGGACCTG GGACAGCCACTGCAGCTTCCCAAGGAGGCTGCAAGGTGGTCGACGGAGTCGCTGACTGCCGGGGTCTGAA CCTTGCTTCGGTACCCAGCAGCCTCCCACCCCATTCCCGGATGCTCATTCTGGATGCTAACCCTCTCAAG GACCTGTGGAACCATTCCCTCCAGGCCTACCCACGCCTGGAGAACCTCAGCCTGCATAGCTGTCACCTGG ACCGTATCAGCCACTACGCCTTCCGAGAGCAAGGCCACTTACGCAACCTGGTTCTGGCAGACAACCGCCT CTCGGAGAACTACAAGGAGTCAGCCGCAGCACTCCACACCCTGCTGGGACTTCGGAGACTGGACTTGTCT GGAAACTCCCTGACCGAAGACATGGCGGCTCTCATGCTTCAGAACCTCTCCTCGTTGGAGGTTGTGTCCT TGGCAAGGAATACCCTCATGAGGCTCGACGACTCTATCTTTGAGGGCCTGGAACACCTTGTAGAGCTAGA TTTGCAGAGAAACTACATCTTTGAGATCGAGGGCGGGGCGTTTGACGGCTTGACTGAGCTGAGGCGTCTC AACCTTGCCTATAACAACCTCCCCTGCATTGTGGACTTCAGCCTCACCCAGTTACGGTTCCTCAACGTCA GTTATAACATCCTAGAGTGGTTCCTGGCAGCCAGGGAGGAGGTGGCCTTCGAATTGGAGATACTGGACCT GTCTCACAACCAGCTGCTCTTCTTCCCACTCTTGCCTCAGTGCGGCAAGCTGCACACCCTCCTGCTCCAG GACAACAACATGGGCTTCTACAGGGAGCTTTACAACACCTCCTCCCCGCAGGAGATGGTGGCCCAGTTCC TTCTTGTGGACGGCAATGTGACTAACATCACAACTGTCAACCTCTGGGAGGAGTTTTCCTCCAGCGACCT GTCAGCTCTTCGCTTCCTGGACATGAGCCAAAACCAGTTCCGGCACTTGCCGGATGGTTTCCTGAAGAAG ACACCTTCCCTTTCCCACCTGAACCTCAACCAGAACTGCCTGAAGATGCTCCACATCCGGGAGCACGAGC CGCCGGGAGCACTCACCGAGCTGGATCTGAGCCACAACCAGTTGGCAGAGCTGCACCTGGCTCCGGGGCT CACGGGCTCCCTCAGGAACCTCCGGGTGTTCAACCTGAGTTCCAACCAGCTCCTGGGGGTCCCCACTGGC CTTTTCGACAATGCCAGCAGCATCACTACAATCGACATGAGTCACAATCAGATCTCACTTTGTCCTCAGA TGGTGCCCGTAGACTGGGAGGGGCCTCCCAGTTGTGTGGATTTCAGAAACATGGGCTCTTTGAGGAGCCT TTCTCTGGACGGCTGTGGGCTGAAGGCATTACAAGACTGCCCGTTCCAGGGGACCTCCCTCACTCATTTA GACCTGTCTAGCAACTGGGGGGTTCTGAATGGGAGCATCAGCCCTCTCTGGGCTGTTGCCCCGACATTAC AGGTCCTGTCTCTCAGGGACGTGGGCCTTGGTTCTGGCGCTGCAGAGATGGACTTCTCTGCGTTTGGGAA TCTGCGGGCGTTGGATCTGTCGGGAAACTCCCTGACCAGCTTCCCAAAGTTCAAGGGCAGTTTGGCCCTT CGGACTCTCGACCTCCGCAGAAACTCTCTCACGGCCCTCCCTCAGAGGGTTGTGTCCGAGCAGCCTCTGA GGGGTCTGCAGACCATCTACCTCAGCCAGAACCCTTATGACTGCTGTGGGGTGGAAGGATGGGGGGCCCT GCAGCAGCACTTCAAGACTGTTGCGGACTTGTCCATGGTCACTTGCAACCTCTCTTCCAAGATCGTCCGT GTGGTGGAGCTGCCCGAAGGCCTGCCTCAGGGCTGTAAGTGGGAACAGGTGGACACTGGTCTCTTCTACC TCGTGCTCATCCTGCCCAGCTGCCTCACCCTGCTGGTGGCCTGTACTGTCGTCTTCCTCACTTTTAAGAA GCCTTTGCTTCAGGTCATCAAGAGCCGCTGCCACTGGTCCTCCATATACTGA
Translation (693 aa): MEFPPLWLCLGFHFLIVEWRSGPGTATAASQGGCKVVDGVADCRGLNLASVPSSLPPHSRMLILDANPLK DLWNHSLQAYPRLENLSLHSCHLDRISHYAFREQGHLRNLVLADNRLSENYKESAAALHTLLGLRRLDLS GNSLTEDMAALMLQNLSSLEVVSLARNTLMRLDDSIFEGLEHLVELDLQRNYIFEIEGGAFDGLTELRRL NLAYNNLPCIVDFSLTQLRFLNVSYNILEWFLAAREEVAFELEILDLSHNQLLFFPLLPQCGKLHTLLLQ DNNMGFYRELYNTSSPQEMVAQFLLVDGNVTNITTVNLWEEFSSSDLSALRFLDMSQNQFRHLPDGFLKK TPSLSHLNLNQNCLKMLHIREHEPPGALTELDLSHNQLAELHLAPGLTGSLRNLRVFNLSSNQLLGVPTG LFDNASSITTIDMSHNQISLCPQMVPVDWEGPPSCVDFRNMGSLRSLSLDGCGLKALQDCPFQGTSLTHL DLSSNWGVLNGSISPLWAVAPTLQVLSLRDVGLGSGAAEMDFSAFGNLRALDLSGNSLTSFPKFKGSLAL RTLDLRRNSLTALPQRVVSEQPLRGLQTIYLSQNPYDCCGVEGWGALQQHFKTVADLSMVTCNLSSKIVR VVELPEGLPQGCKWEQVDTGLFYLVLILPSCLTLLVACTVVFLTFKKPLLQVIKSRCHWSSIY
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