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Report for CCDS8431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8431.1 Public Homo sapiens 11 POU2F3 24 110 108 CCDS HistoryNCBI Gene:25833Re-query CCDS DB by CCDS ID:8431.1Re-query CCDS DB by GeneID:25833See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8431.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543440.7 ENSP00000441687.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000543440.7Link to Ensembl Protein Viewer:ENSP00000441687.2Re-query CCDS DB by Nucleotide ID:ENST00000543440Re-query CCDS DB by Protein ID:ENSP00000441687
Original member Current member NCBI NM_014352.4 NP_055167.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014352.4Link to Protein Sequence:NP_055167.2Re-query CCDS DB by Nucleotide ID:NM_014352Re-query CCDS DB by Protein ID:NP_055167Link to BLAST:NP_055167.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055167.2 436 Q9UKI9-1 436 100% 0 0

Chromosomal Locations for CCDS 8431.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120240344 120240371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120246449 120246517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120269210 120269244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120298265 120298390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120299624 120299726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120302286 120302368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120305030 120305212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120305644 120305785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120307479 120307615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120309425 120309586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120315361 120315427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120317229 120317364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120318353 120318392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGGTGAATCTGGAGTCCATGCACACAGATATCAAGATGAGTGGGGATGTAGCCGATTCCACGGATGCTC
GCAGCACTCTCAGCCAGGTGGAGCCAGGAAATGATCGAAATGGCCTAGATTTCAACAGGCAGATTAAAAC
CGAAGATCTCAGTGACTCCCTGCAGCAGACCCTCTCCCATCGGCCATGCCACCTGAGTCAAGGACCTGCC
ATGATGTCCGGAAACCAAATGTCTGGGCTAAATGCCAGCCCATGTCAGGACATGGCTTCCCTCCATCCGC
TCCAGCAGCTTGTGCTGGTTCCCGGCCACTTACAGTCTGTATCCCAGTTCCTGCTATCTCAGACCCAGCC
TGGGCAGCAAGGTCTGCAGCCAAATCTCCTCCCCTTTCCACAGCAACAAAGCGGTCTCCTCCTCCCACAG
ACTGGGCCGGGACTGGCATCCCAGGCATTTGGGCACCCTGGGCTGCCAGGATCCTCTTTAGAACCCCACC
TGGAAGCATCCCAGCATCTCCCAGTGCCCAAGCATCTACCCAGCTCTGGAGGGGCCGATGAGCCCAGTGA
CCTCGAGGAGCTGGAGAAGTTTGCCAAGACCTTCAAGCAGAGGCGCATTAAGCTGGGCTTCACACAGGGA
GATGTGGGGCTGGCGATGGGAAAGCTGTATGGCAACGACTTCAGCCAGACCACCATCTCACGATTTGAGG
CCCTCAACCTGAGCTTCAAGAACATGTGCAAGCTCAAGCCCCTGCTGGAGAAGTGGCTGAATGATGCAGA
GTCCTCTCCGTCAGACCCCTCAGTGAGCACGCCCAGCTCCTACCCCAGCCTCAGTGAAGTATTTGGTAGG
AAGAGAAAGAAACGGACCAGCATCGAGACCAACATCCGCCTGACTCTGGAGAAGAGGTTTCAAGATAACC
CAAAACCCAGCTCGGAGGAGATCTCCATGATTGCAGAGCAGTTGTCCATGGAGAAGGAGGTGGTGAGGGT
CTGGTTCTGCAACCGACGCCAAAAGGAGAAGCGAATCAACTGCCCTGTGGCCACACCCATCAAACCACCT
GTCTACAACTCCCGGCTGGTATCTCCCTCAGGGTCTCTGGGCCCCCTCTCTGTCCCTCCTGTCCACAGTA
CCATGCCTGGAACAGTAACGTCATCCTGTTCCCCTGGGAACAACAGCAGGCCTTCATCTCCTGGCTCAGG
ACTCCACGCCAGCAGCCCCACTGCATCTCAAAATAACTCCAAAGCAGCAGTGAACTCCGCCTCCAGTTTT
AACTCTTCAGGATCTTGGTACCGATGGAATCATTCCACCTACCTCCACTGA

Translation (436 aa):
MVNLESMHTDIKMSGDVADSTDARSTLSQVEPGNDRNGLDFNRQIKTEDLSDSLQQTLSHRPCHLSQGPA
MMSGNQMSGLNASPCQDMASLHPLQQLVLVPGHLQSVSQFLLSQTQPGQQGLQPNLLPFPQQQSGLLLPQ
TGPGLASQAFGHPGLPGSSLEPHLEASQHLPVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQG
DVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGR
KRKKRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINCPVATPIKPP
VYNSRLVSPSGSLGPLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLHASSPTASQNNSKAAVNSASSF
NSSGSWYRWNHSTYLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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