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Report for CCDS84360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84360.1 Public Mus musculus 18 Lama3 23 108 98 CCDS HistoryNCBI Gene:16774Re-query CCDS DB by CCDS ID:84360.1Re-query CCDS DB by GeneID:16774See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000188815.1 ENSMUSP00000140104.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188815.1Link to Ensembl Protein Viewer:ENSMUSP00000140104.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188815Re-query CCDS DB by Protein ID:ENSMUSP00000140104
Original member Current member NCBI NM_001347461.2 NP_001334390.1 Accepted alive Link to Nucleotide Sequence:NM_001347461.2Link to Protein Sequence:NP_001334390.1Re-query CCDS DB by Nucleotide ID:NM_001347461Re-query CCDS DB by Protein ID:NP_001334390Link to BLAST:NP_001334390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334390.1 1724 Q61789-2 1724 100% 0 0

Chromosomal Locations for CCDS 84360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12504225 12504395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12506921 12507034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12510450 12510559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12513644 12513724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12516482 12516588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12518737 12518787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12519859 12520010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12524506 12524616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12524726 12524837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12525010 12525177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12525784 12525980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12527549 12527665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12528295 12528449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12528713 12528854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12529506 12529608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12531835 12531948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12532034 12532213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12533961 12534103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12537687 12537857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12539669 12539820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12539962 12540124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12540535 12540668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12542308 12542452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12547342 12547461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12549192 12549325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12552778 12552895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12553165 12553305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12556627 12556766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12557671 12557802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12561697 12561850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12567666 12567832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12571900 12572083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12574214 12574354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12577752 12577911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12578014 12578144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12580286 12580379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12581693 12581812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12582518 12582663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5175 nt):
ATGCTGCCTGCAGTGAGGTGGTCAGCTTGGAGCACAGGATGGTTGTGGATCTTTGGGGCAGCTCTGGGCC
AGTGCCTGGGGTATGGCTCAGAGCAGCAAAGGGTAGCATTTCTTCAGCGACCAAGTCAAAATCATCTGCA
AGCAAGTTATATGGAGCTTAGACCCAGCCAGGGTTGTCGCCCTGGATACTATTGGGACAACAAAAGCTTA
CCTGTAGGAAGGTGTGTTCCCTGCAATTGCAACGGACATTCAAATAGATGCCAGGATGGCTCCGGGATAT
GCATTAACTGTCAGCACAACACAGCTGGGGAGCACTGTGAGCGTTGCCAAGCAGGTCACTATGGAAATGC
CATCCACGGATCTTGTAGGGTCTGCCCCTGCCCTCATACCAACAGTTTTGCCACCGGCTGTGCTGTGGAT
GGTGGAGCTGTGAGGTGTGCCTGCAAACCCGGATACACAGGAACACAGTGTGAGAGGTGTGCACCAGGAT
ATTTTGGGAACCCCCAGAAATTTGGAGGTAGCTGCCAGCCATGCAATTGTAACAGCAATGGCCAGTTAGG
TCCTTGCGACCCCCTAACTGGAGACTGTGTAAACCAAGAACCCAAAGATGGCAGCCCTGCAGAAGAATGT
GATGACTGCGACAGCTGTGTGATGACGCTCTTAAATGACTTGGCCTCCATGGGTGAGGAACTCCGCCTGG
TGAAGTCAAAGCTGCAGGGGCTGAGTGTGAGCACGGGTGCTCTGGAACAGATCCGGCACATGGAGACGCA
GGCCAAGGACCTGAGGAACCAGCTGCTTGGCTTCCGTTCTGCCACCTCAAGTCATGGGTCCAAAATGGAT
GACCTGGAAAAAGAGCTGAGTCATTTGAACCGGGAATTTGAAACTCTGCAAGAAAAGGCACAGGTCAATT
CCAGAAAAGCACAAACATTATATAACAACATTGATCAGACAATCCAAAGTGCCAAAGAACTGGACATGAA
GATTAAAAACATCGTTCAGAATGTGCACATTCTCCTGAAGCAGATGGCGAGGCCAGGTGGAGAAGGCACG
GACTTGCCAGTGGGTGACTGGTCCAGGGAGCTGGCCGAAGCTCAACGCATGATGCGAGACCTGCGAAGCC
GAGACTTTAAAAAGCACCTCCAAGAAGCAGAGGCCGAGAAAATGGAAGCCCAGCTCTTACTGCACCGGAT
CAGGACCTGGCTGGAATCCCACCAGGTGGAGAACAACGGACTGCTAAAGAATATTCGGGACTCCTTAAAT
GATTATGAAGACAAACTTCAGGACCTACGTTCCATCCTCCAGGAGGCAGCTGCCCAGGCAAAGCAGGCCA
CTGGCATCAACCATGAAAATGAGGGGGTTCTCGGAGCCATCCAGAGACAAATGAAAGAAATGGATTCCCT
GAAGAATGACTTCACCAAGTACCTGGCCACAGCCGACTCTTCCCTGCTGCAGACCAACAATCTACTGCAG
CAGATGGACAAAAGCCAGAAGGAATATGAAAGCTTAGCTGCTGCTTTAAATGGAGCAAGACAGGAACTGA
GTGACAGAGTGCGAGAACTGTCCAGATCGGGTGGCAAAGCACCGCTGGTGGTGGAGGCAGAGAAGCATGC
ACAGTCTTTACAGGAGCTGGCAAAGCAGCTGGAAGAGATAAAGAGAAACACCAGCGGGGATGAGCTGGTG
CGTTGTGCTGTGGATGCTGCCACGGCCTATGAGAACATCCTCAATGCCATCAGAGCAGCAGAGGATGCAG
CCAGCAAGGCCACCAGTGCCTCCAAGTCTGCCTTCCAAACAGTGATAAAGGAAGACCTTCCAAAAAGAGC
TAAGACCCTGAGTTCTGACAGCGAGGAACTGTTAAATGAAGCCAAGATGACACAGAAAAGGCTACAGCAA
GTCAGTCCAGCTCTCAACAGCCTACAACAAACCCTGAAGACTGTATCAGTTCAGAAGGACCTGCTAGATG
CCAACCTCACTGTTGCCCGTGATGATCTTCATGGGATACAGAGAGGTGATATCGACAGTGTGGTGATCGG
TGCAAAGAGCATGGTCAGGGAAGCCAACGGAATAACAAGCGAGGTCCTGGACGGGCTCAACCCCATCCAG
ACAGATTTGGGAAGGATTAAGGACAGCTATGAGAGCGCACGGCGTGAAGACTTCAGCAAGGCTCTGGTCG
ATGCCAATAACTCAGTAAAGAAATTAACCAGGAAGTTGCCTGATCTTTTTATCAAGATTGAAAGTATCAA
CCAACAGTTGCTGCCCCTGGGGAACATCTCTGACAATGTGGACCGAATCCGAGAACTCATTCAGCAGGCC
AGAGATGCTGCAAACAAGGTTGCAATTCCCATGAGGTTCAATGGTAAATCTGGTGTCGAAGTCCGACTGC
CGAATGACCTAGAAGATTTAAAAGGATACACATCTCTGTCTTTGTTTCTCCAAAGACCTGACTTGCGAGA
GAACGGAGGCACTGAGGATATGTTTGTAATGTACCTTGGGAATAAGGATGCCTCCAAGGACTACATTGGC
ATGGCGGTTGTAGATGGCCAGCTGACATGTGTGTACAACCTGGGGGACCGAGAGGCTGAAGTTCAGATAG
ACCAGGTCCTGACGGAGAGTGAGTCTCAGGAGGCAGTTATGGACCGGGTGAAGTTCCAGAGGATATATCA
ATTTGCCAAGCTTAATTACACCAAAGAAGCCACATCTACTAAACCCAAAGCCCCTGGGGTCTATGACATG
GAGAGCGCCAGTAGCAACACACTCCTTAATTTGGATCCTGAGAATGCAGTATTTTACGTCGGCGGTTATC
CACCTGGTTTTGAGCTTCCACGCAGACTGCGGTTCCCTCCATACAAAGGCTGTATCGAACTAGATGACCT
CAACGAAAACGTTCTAAGCTTGTACAATTTCAAGACAACTTTCAATCTCAATACCACTGAAGTAGAGCCT
TGTAGGAGGAGAAAGGAAGAGTCGGACAAAAATTACTTTGAAGGCACAGGCTATGCTCGAATTCCTACCC
AGCCAAATGCTCCCTTCCCAAACTTCATGCAGACCATCCAAACTACTGTGGACAGAGGTCTACTGTTCTT
CGCAGAAAACCAGGATAACTTCATATCTCTGAATATAGAAGACGGCAATCTCATGGTAAAATACAAACTA
AATTCAGAGCCACCCAAAGAGAAAGGAATTCGAGACACCATCAACAACGGGAGAGATCACATGATTTTAA
TCTCAATTGGAAAATCACAAAAGCGGATGTTGATAAATATGAATAAACATAGTATAATAATTGAAGGGGA
AATATTTGATTTCAGCACATATTACTTGGGAGGAATTCCAATTGCAATCAGAGAAAGGTTTAACATCTCA
ACGCCTGCTTTCCAAGGCTGCATGAAGAATCTGAAGAAAACCAGTGGGGTTGTCAGGTTGAACGATACAG
TGGGTGTGACCAAAAAGTGCTCAGAAGACTGGAAGCTTGTGCGAACCGCCTCGTTCTCCAGAGGAGGACA
GATGAGTTTCACAAACTTGGATGTGCCCTCACTTGACCGCTTCCAGCTCTCCTTTGGGTTCCAGACCTTT
CAACCCAGCGGTACACTACTAAACCATCAGACACGGACAAGTAGCCTACTGGTCACCCTGGAAGATGGTC
ATATTGCGTTGAGCACCAGGGACAGCAGCAGCCCGATTTTCAAGTCTCCAGGGACCTACATGGATGGTTT
ACTGCATCATGTATCTGTAATAAGCGACACCTCAGGCCTGCGCCTTCTCATCGATGACCAGGTTCTGAGA
AGAAACCAAAGGCTCGCTAGCTTCTCTAATGCCCAGCAGTCGCTCAGCATGGGAGGCGGTTATTTCGAGG
GTTGTATCAGCAACGTTTTTGTCCAAAGGATGTCACAGAGTCCAGAAGTCCTGGATATGGCCAGCAAGTC
TACTAAGAGGGATGCATTCCTAGGAGGCTGCAGTTTAAACAAGCCACCTTTTCTTATGTTGTTTAAGAGT
CCCAAGGGATTTAACAAGGCCCGGAGTTTCAATGTCAATCAGCTGTTGCAAGATGCACCTCAGGCTGCAA
GGAGCATAGAGGCTTGGCAAGATGGGAAGTCCTGCCTACCACCTCTGAACACCAAGGCCACTCACAGAGC
CCTGCAGTTTGGGGACAGTCCTACCAGCCACTTGCTATTCAAGCTTCCCCAGGAGCTGCTGAAACCCAGG
TTACAGTTTTCTTTGGACATACAGACAACTTCCTCCAGAGGGCTAGTGTTTCACACAGGCACCAGGGACT
CCTTTGTGGCTCTCTATCTCTCAGAAGGCCATGTCATCTTTGCCTTGGGGGCAGGAGGGAAGAAACTGAG
ACTCAGAAGCAAAGAGAGATACCACGATGGGAAGTGGCACTCGGTGGTGTTTGGACTGAGTGGAAGAAAG
GTGCACCTGGTGGTGGATGGGCTGAGGGCCCAGGAAGGCAGTTTGCCTGGAAACTCTACCATCAGCCCCA
GAGAACAGGTTTACCTGGGGTTGTCACCATCAAGAAAGTCAAAGAGCCTCCCCCAGCACAGTTTTGTGGG
GTGTCTGAGGAACTTCCAGTTGGACTCAAAACCCCTGGATTCCCCCTCTGCGAGGTCTGGGGTATCTCCC
TGCTTAGGTGGCTCTTTGGAGAAAGGCATTTATTTCTCCCAAGGAGGAGGTCACGTGGTCCTAGCCAATT
CCGTGTCCTTGGAGCCAGCACTTACGCTCACTCTCAGCATTCGCCCACGAAGTCTCACCGGGGTCTTGAT
CCACATCGCAAGTCAATCTGGAGAGCACTTAAGTGTCTACATGGAGGCAGGGAAGGTCACGACCTCTATG
AACAGTGAGGCAGGTGGGACCGTGACATCAATTACACCGAAGAGATCTCTGTGTGATGGACAATGGCACT
CGGTGACAGTCTCCATTAAACAGCACACTCTGCATCTGGAACTGGATACAGACAATAGCTACACAGCTGG
GCAGCTTTCCTTCCCACCGAACAGCACCCGAGGGTCACTACACATTGGAGGCGTCCCAGACAAATTGAAA
ATGCTTACACTCCCTGTGTGGAACTCATTTTTTGGCTGTCTGAAGAATATTCAAGTAAACCACATCCCTG
TCCCCATCACAGAAGCCACCGATGTCCAAGGTTCTGTCAGCCTGAATGGCTGCCCTGACCACTAA

Translation (1724 aa):
MLPAVRWSAWSTGWLWIFGAALGQCLGYGSEQQRVAFLQRPSQNHLQASYMELRPSQGCRPGYYWDNKSL
PVGRCVPCNCNGHSNRCQDGSGICINCQHNTAGEHCERCQAGHYGNAIHGSCRVCPCPHTNSFATGCAVD
GGAVRCACKPGYTGTQCERCAPGYFGNPQKFGGSCQPCNCNSNGQLGPCDPLTGDCVNQEPKDGSPAEEC
DDCDSCVMTLLNDLASMGEELRLVKSKLQGLSVSTGALEQIRHMETQAKDLRNQLLGFRSATSSHGSKMD
DLEKELSHLNREFETLQEKAQVNSRKAQTLYNNIDQTIQSAKELDMKIKNIVQNVHILLKQMARPGGEGT
DLPVGDWSRELAEAQRMMRDLRSRDFKKHLQEAEAEKMEAQLLLHRIRTWLESHQVENNGLLKNIRDSLN
DYEDKLQDLRSILQEAAAQAKQATGINHENEGVLGAIQRQMKEMDSLKNDFTKYLATADSSLLQTNNLLQ
QMDKSQKEYESLAAALNGARQELSDRVRELSRSGGKAPLVVEAEKHAQSLQELAKQLEEIKRNTSGDELV
RCAVDAATAYENILNAIRAAEDAASKATSASKSAFQTVIKEDLPKRAKTLSSDSEELLNEAKMTQKRLQQ
VSPALNSLQQTLKTVSVQKDLLDANLTVARDDLHGIQRGDIDSVVIGAKSMVREANGITSEVLDGLNPIQ
TDLGRIKDSYESARREDFSKALVDANNSVKKLTRKLPDLFIKIESINQQLLPLGNISDNVDRIRELIQQA
RDAANKVAIPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPDLRENGGTEDMFVMYLGNKDASKDYIG
MAVVDGQLTCVYNLGDREAEVQIDQVLTESESQEAVMDRVKFQRIYQFAKLNYTKEATSTKPKAPGVYDM
ESASSNTLLNLDPENAVFYVGGYPPGFELPRRLRFPPYKGCIELDDLNENVLSLYNFKTTFNLNTTEVEP
CRRRKEESDKNYFEGTGYARIPTQPNAPFPNFMQTIQTTVDRGLLFFAENQDNFISLNIEDGNLMVKYKL
NSEPPKEKGIRDTINNGRDHMILISIGKSQKRMLINMNKHSIIIEGEIFDFSTYYLGGIPIAIRERFNIS
TPAFQGCMKNLKKTSGVVRLNDTVGVTKKCSEDWKLVRTASFSRGGQMSFTNLDVPSLDRFQLSFGFQTF
QPSGTLLNHQTRTSSLLVTLEDGHIALSTRDSSSPIFKSPGTYMDGLLHHVSVISDTSGLRLLIDDQVLR
RNQRLASFSNAQQSLSMGGGYFEGCISNVFVQRMSQSPEVLDMASKSTKRDAFLGGCSLNKPPFLMLFKS
PKGFNKARSFNVNQLLQDAPQAARSIEAWQDGKSCLPPLNTKATHRALQFGDSPTSHLLFKLPQELLKPR
LQFSLDIQTTSSRGLVFHTGTRDSFVALYLSEGHVIFALGAGGKKLRLRSKERYHDGKWHSVVFGLSGRK
VHLVVDGLRAQEGSLPGNSTISPREQVYLGLSPSRKSKSLPQHSFVGCLRNFQLDSKPLDSPSARSGVSP
CLGGSLEKGIYFSQGGGHVVLANSVSLEPALTLTLSIRPRSLTGVLIHIASQSGEHLSVYMEAGKVTTSM
NSEAGGTVTSITPKRSLCDGQWHSVTVSIKQHTLHLELDTDNSYTAGQLSFPPNSTRGSLHIGGVPDKLK
MLTLPVWNSFFGCLKNIQVNHIPVPITEATDVQGSVSLNGCPDH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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