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Report for CCDS84449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84449.1 Public Mus musculus 19 Psd 23 108 98 CCDS HistoryNCBI Gene:73728Re-query CCDS DB by CCDS ID:84449.1Re-query CCDS DB by GeneID:73728See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096029.11 ENSMUSP00000093729.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096029.11Link to Ensembl Protein Viewer:ENSMUSP00000093729.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000096029Re-query CCDS DB by Protein ID:ENSMUSP00000093729
Original member Current member EBI ENSMUST00000225323.1 ENSMUSP00000152942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225323.1Link to Ensembl Protein Viewer:ENSMUSP00000152942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225323Re-query CCDS DB by Protein ID:ENSMUSP00000152942
Original member Current member NCBI NM_001347454.1 NP_001334383.1 Accepted alive Link to Nucleotide Sequence:NM_001347454.1Link to Protein Sequence:NP_001334383.1Re-query CCDS DB by Nucleotide ID:NM_001347454Re-query CCDS DB by Protein ID:NP_001334383Link to BLAST:NP_001334383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334383.1 1025 Q5DTT2-3 1025 100% 0 0

Chromosomal Locations for CCDS 84449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46312699 46312929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46313302 46313445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46313654 46313798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46314176 46314333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46314463 46314533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46314613 46314803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46316033 46316076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46319474 46319563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46319658 46319716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46320251 46320363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46320527 46320607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46320769 46320966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46322056 46322496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46323128 46323482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46323914 46324016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46324276 46324929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3078 nt):
ATGGCCCAGGGTGCCATGCGCTTCTGCTCAGAAGGCGACTGTGCCATCTCCCCACCACGATGTCCTCGTC
GCTGGCTCCCCGAAGGCCCAGTGCCCCAAAGTCCCCCAGCCAGCATGTATGGCAGCACAGGATCCCTTAT
ACGACGAGTGGTGGGCCCAGGTCCTCGAGGCCGGGATCTGGGACGTGTGACAGCACCTTGTACCCCTCTG
CGAGCCCCTCCCTCACCCCATATAGCTCCCTCACCCTGGGGACCCTCTTCACCCACTGGGCAGCCTCCAC
CAGGGGCACAGAGTTCTGTGGTCATCTTCCGTTTTGTGGAGAAGGCCAGTGTGAGGCCACTGAATGGCCT
ACCTGCTTCTGGAGGCCTGAGTCGGAGCTGGGACCTGGGCGGGATTTCTGCCCCCAGGCCCACCCCAGCC
CTTGGACCTGGCTGCAACCGGAAGTTGCGGCTAGAGGCATCCACATCAGACCCACTCCCAGCTGGAGGAG
GCTCTGTTCTTCCTGGCAGCAGGGACCCCTCACGTGGACCATTGGTCCCACCCCAGATCGGGGCAGATGG
GCTTTACTCCTCCCTCCCCAATGGGCTGGGGGGGACCCCTGAGCACCTGGCCATGCACTTCCGAGGACCT
GCAGACACCGGATTCCTAAACCAGGGGGACACCTGGTCCTCCCCCCGGGAAGTCTCCTCTCATGCCCAGA
GAATCGCTCGAGCCAAGTGGGAATTCTTCTATGGCTCCTTGGACGCCCCCAGCTCAGGTGCTAAGCCCCC
AGAGCAGGTCCTCCCATCACGTGGGGTGGGCTCCAAGCAAGGCTCTGGGGTGGCTGTGGGGCGAGCAGCC
AAGTACTCCGAGACAGACCTGGACAAGGTGCCCCTGAGGTGCTACCGAGAGACTGACATCGATGAGGTGC
TGGCTGAGCGGGAGGAGGCCGACTCTGCCATTGAGAGTCAGCCCAGCTCTGAGGGCCCCCATGGCACTGC
CCAACCACCTGCCTCACGACCTAGCCCATGCCCTGGCCCTTCTTCCAGTCTGGGCAGTGGCAACGAAGAT
GATGAGGCAGGAGGTGAAGAGGATGTGGATGATGAGGTGTTCGAGGCCTCGGAGGGGGCCCGGCCAGGGG
ACCACATGCCTCACTCTGGGCTTCTCAAGTCACCAGTACCCTTCCTGCTTGGGACCAGCCCCTCAGCGGA
TGGGCCTGACTCCTTCAGTTGTGTGTTTGAAGCTATCTTGGAGTCACACCGGGCCAAGGGCACCTCCTAT
AGTAGCCTTGCCTCCCTGGAGGCACTGGCCTCACCTGGCCCAACCCAGAGCCCCTTCTTCACCTTTGAGA
TGCCTCCCCAGCCCCCAGCTCCCAGGCCTGACCCACCTGCACCTGCCCCACTTGCCCCTCTTGAACCTGA
TTCTGGCACCAGCTCTGCTGCTGATGGTCCTTGGACCCAGAGAAGGGAGGTGGAAGAGTCAGATGCTGGG
GCCACGCTGGCCCCAAGGAAGGAGCTTCCTAGTCCCTCCCACTCTGAGGATAGCTTTGGGCTGGGGGCAG
CACCCCTAGGCAGCAGTGAACCACCCCTAAGTCAGCTGGTATCCGACTCAGACTCAGAGCTGGACAGCAC
AGAGCGGCTGGCCCTGGGAAGCACAGACACCTTGTCCAATGGACAGAAAGCAGATTTGGAGGCTGCACAG
CGCCTAGCCAAGAGGCTATACCGACTCGATGGCTTCAGGAAGGCCGATGTGGCACGGCATCTGGGCAAGA
ACAATGACTTCAGCAAATTGGTGGCTGGCGAGTATCTGAAGTTTTTTGTCTTCACGGGCATGACTCTGGA
CCAAGCTCTCAGGGTATTTCTAAAGGAGCTGGCCTTAATGGGTGAGACCCAGGAGCGGGAGCGTGTACTG
GCCCACTTCTCCCAGCGATATTTCCAGTGTAATCCTGAAGCCCTGTCCTCAGAGGACGGTGCTCACACGC
TGACCTGTGCCCTCATGCTCCTCAACACAGATCTCCATGGCCATAACATTGGGAAGCGCATGACCTGTGG
GGACTTCATCGGAAACCTGGAGGGCCTCAATGATGGTGGCGACTTCCCCAGGGAGCTGCTCAAGGCCTTG
TACAGCTCCATCAAGAATGAAAAATTGCAATGGGCCATAGACGAGGAGGAGCTGCGACGGTCTCTGTCCG
AGTTGGCCGATCCTAACCCCAAGGTCATCAAGCGGGTCAGCGGAGGCAGTGGCAGCAGTTCCAGCCCCTT
CCTGGACCTGACTCCTGAGCCCGGGGCAGCTGTCTACAAGCACGGGGCCCTGGTGCGAAAGGTGCACGCA
GACCCTGACTGCAGGAAGACACCTCGTGGCAAGCGGGGCTGGAAGAGCTTCCACGGGATCCTCAAGGGCA
TGATCCTCTACCTGCAGAAGGAGGAGTATCAGCCTGGGAAGGCTCTTTCCGAGGCAGAGCTGAAGAATGC
TATCAGCATCCACCACGCCCTGGCTACCCGCGCCAGCGATTATAGCAAGAGACCACACGTCTTCTACCTG
CGCACAGCTGACTGGCGGGTCTTCCTCTTCCAGGCTCCGAGCCTGGAGCAAATGCAGTCCTGGATCACTC
GCATCAATGTGGTGGCTGCCATGTTTTCTGCACCCCCCTTCCCAGCTGCTGTTAGCTCCCAGAAGAAATT
CAGCCGCCCTCTGCTGCCCAGTGCTGCCACCCGCCTCTCCCAGGAGGAGCAGGTGAGGACCCATGAGGCC
AAGCTGAAGGCCATGGCCAGCGAGCTGAGAGAGCACCGGGCTGCACATCTGGGAAAGAAGGCCCGAGGCA
AGGAGGCGGATGAGCAGCGGCAGAAGGAGGCCTACCTGGAGTTTGAGAAATCCCGCTACGGCACCTATGC
AGCACTGCTTCGAGTCAAGATGAAGGCAGCCAGCGAGGAGCTGGACACCATAGAGGCAGCCCTGGCCCAG
GCTGGGAGCACGGAGGATGGATGCCCTCCGCCTCACTCCAGTCCTTCCCTGCGGCCCAAGCCCACCAGCC
AGCCCCGGGCTCAGCGTCCTGGCTCAGAAACCCGGGCTGGAGCAGGCAGTACAAGGCCAAAGCCCTGA

Translation (1025 aa):
MAQGAMRFCSEGDCAISPPRCPRRWLPEGPVPQSPPASMYGSTGSLIRRVVGPGPRGRDLGRVTAPCTPL
RAPPSPHIAPSPWGPSSPTGQPPPGAQSSVVIFRFVEKASVRPLNGLPASGGLSRSWDLGGISAPRPTPA
LGPGCNRKLRLEASTSDPLPAGGGSVLPGSRDPSRGPLVPPQIGADGLYSSLPNGLGGTPEHLAMHFRGP
ADTGFLNQGDTWSSPREVSSHAQRIARAKWEFFYGSLDAPSSGAKPPEQVLPSRGVGSKQGSGVAVGRAA
KYSETDLDKVPLRCYRETDIDEVLAEREEADSAIESQPSSEGPHGTAQPPASRPSPCPGPSSSLGSGNED
DEAGGEEDVDDEVFEASEGARPGDHMPHSGLLKSPVPFLLGTSPSADGPDSFSCVFEAILESHRAKGTSY
SSLASLEALASPGPTQSPFFTFEMPPQPPAPRPDPPAPAPLAPLEPDSGTSSAADGPWTQRREVEESDAG
ATLAPRKELPSPSHSEDSFGLGAAPLGSSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQ
RLAKRLYRLDGFRKADVARHLGKNNDFSKLVAGEYLKFFVFTGMTLDQALRVFLKELALMGETQERERVL
AHFSQRYFQCNPEALSSEDGAHTLTCALMLLNTDLHGHNIGKRMTCGDFIGNLEGLNDGGDFPRELLKAL
YSSIKNEKLQWAIDEEELRRSLSELADPNPKVIKRVSGGSGSSSSPFLDLTPEPGAAVYKHGALVRKVHA
DPDCRKTPRGKRGWKSFHGILKGMILYLQKEEYQPGKALSEAELKNAISIHHALATRASDYSKRPHVFYL
RTADWRVFLFQAPSLEQMQSWITRINVVAAMFSAPPFPAAVSSQKKFSRPLLPSAATRLSQEEQVRTHEA
KLKAMASELREHRAAHLGKKARGKEADEQRQKEAYLEFEKSRYGTYAALLRVKMKAASEELDTIEAALAQ
AGSTEDGCPPPHSSPSLRPKPTSQPRAQRPGSETRAGAGSTRPKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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