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Report for CCDS84530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84530.1 Public Mus musculus 2 Scn1a 23 108 98 CCDS HistoryNCBI Gene:20265Re-query CCDS DB by CCDS ID:84530.1Re-query CCDS DB by GeneID:20265See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 84530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112366.7 ENSMUSP00000107985.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112366.7Link to Ensembl Protein Viewer:ENSMUSP00000107985.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112366Re-query CCDS DB by Protein ID:ENSMUSP00000107985
Original member Current member NCBI NM_001313997.1 NP_001300926.1 Accepted alive Link to Nucleotide Sequence:NM_001313997.1Link to Protein Sequence:NP_001300926.1Re-query CCDS DB by Nucleotide ID:NM_001313997Re-query CCDS DB by Protein ID:NP_001300926Link to BLAST:NP_001300926.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300926.1 2009 A2APX8-1 2009 100% 0 0

Chromosomal Locations for CCDS 84530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 66272885 66274062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66277562 66277832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66280696 66280800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66285911 66286048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66287723 66287776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66288874 66289155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66296753 66296875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66299624 66299797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66302366 66302520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66303592 66303712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66317804 66318286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66319386 66319742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66320868 66321041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66322254 66322492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66323312 66323444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66324571 66324951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66325902 66326186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66327651 66327857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66328405 66328546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66329031 66329094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66331239 66331508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66332207 66332298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66334208 66334336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66335440 66335529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66337878 66337996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66350914 66351177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6030 nt):
ATGGAGCAAACAGTGCTTGTACCACCAGGACCTGACAGCTTCAACTTCTTCACCAGAGAATCCCTTGCAG
CTATTGAAAGGCGCATTGCAGAAGAGAAGGCTAAGAATCCCAAGCCAGACAAAAAAGATGATGATGAAAA
TGGCCCAAAGCCAAACAGTGACTTGGAAGCTGGGAAGAACCTTCCATTTATCTATGGAGACATTCCTCCA
GAGATGGTGTCGGAGCCTCTGGAGGACCTGGACCCCTACTATATCAATAAGAAGACTTTTATAGTATTGA
ATAAAGGGAAGGCCATCTTCCGGTTCAGTGCCACCTCCGCCCTGTACATTTTAACACCCTTCAATCCTCT
TAGGAAAATAGCTATTAAGATTTTGGTACACTCATTATTCAGCATGTTAATCATGTGCACTATTTTGACA
AACTGTGTATTTATGACAATGAGTAACCCTCCCGACTGGACAAAGAATGTGGAGTACACCTTCACAGGAA
TATATACTTTTGAATCACTAATAAAAATTATTGCAAGGGGCTTCTGTTTAGAAGATTTTACTTTCCTTCG
CGACCCATGGAACTGGCTGGACTTCACTGTCATTACATTCGCATATGTGACGGAGTTTGTGGACCTGGGC
AATGTCTCAGCATTGAGAACATTCAGAGTTCTTCGAGCATTGAAAACTATTTCAGTCATTCCAGGCCTGA
AGACCATCGTGGGGGCCCTGATCCAGTCGGTGAAGAAGCTGTCTGACGTCATGATACTCACTGTGTTCTG
TCTCAGTGTGTTCGCACTCATCGGGTTGCAGCTCTTCATGGGCAACCTGAGGAATAAATGTGTACAGTGG
CCTCCCACCAACGCTTCCCTTGAGGAACATAGCATAGAGAAGAATATAACTATGGATTACAATGGCACAC
TTGTAAATGAAACCGTGTTCGAGTTTGACTGGAAATCATACATTCAAGACTCAAGATATCATTATTTCCT
GGAGGGTGTTTTAGATGCACTGCTGTGTGGAAATAGCTCTGATGCAGGCCAATGTCCAGAAGGATATATG
TGTGTAAAAGCTGGTAGAAACCCTAATTATGGTTACACAAGCTTTGATACCTTCAGTTGGGCATTTTTGT
CCCTGTTTCGACTGATGACTCAGGACTTCTGGGAAAATCTATACCAACTGACATTGCGTGCTGCTGGCAA
AACCTACATGATATTTTTTGTGCTGGTCATTTTCTTGGGCTCATTCTACCTGATAAACTTGATCCTGGCT
GTGGTGGCCATGGCCTATGAGGAGCAGAATCAGGCCACACTGGAGGAGGCTGAACAGAAAGAGGCAGAAT
TTCAGCAGATGTTGGAGCAACTTAAGAAGCAGCAAGAGGCTGCACAGCAGGCAGCGGCTACAACAGCCTC
AGAACATTCCAGGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCTCTTCAGAAGCCTCTAAGTTGAGT
TCGAAGAGTGCTAAAGAAAGACGAAATCGGAGGAAAAAAAGGAAACAGAAAGAGCAGTCTGGAGGAGAAG
AGAAAGATGATGATGAATTCCACAAGTCTGAGTCTGAAGACAGCATCAGGAGGAAGGGGTTTCGCTTCTC
CATAGAAGGGAATAGACTGACATATGAAAAGAGGTACTCTTCCCCGCATCAGTCTCTGTTAAGCATTCGT
GGTTCCCTGTTCTCCCCAAGACGCAATAGCAGAACAAGTCTTTTCAGCTTTAGAGGGCGAGCCAAGGATG
TGGGGTCTGAGAATGACTTTGCTGATGATGAACACAGCACCTTTGAGGATAATGAGAGCCGTAGAGACTC
ACTGTTCGTTCCCCGAAGACACGGAGAGCGACGCAACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGA
ATGCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACAGCACGGTGGATTGCAATGGTGTGGTTTCCTTGG
TTGGTGGACCCTCAGTTCCCACATCGCCAGTTGGACAGCTTCTGCCAGAGGTGATAATAGATAAGCCAGC
TACTGATGACAATGGAACAACCACTGAAACTGAGATGAGAAAGAGGAGGTCGAGCTCTTTCCATGTTTCC
ATGGACTTTCTAGAAGATCCTTCCCAGAGGCAAAGGGCAATGAGCATAGCCAGCATCTTAACAAATACAG
TAGAAGAACTAGAAGAATCCAGGCAGAAATGTCCACCCTGTTGGTATAAATTTTCCAACATATTCTTAAT
TTGGGACTGTTCTCCATATTGGCTGAAAGTTAAACATATTGTCAACCTGGTGGTGATGGACCCATTTGTT
GATCTGGCCATTACCATCTGCATTGTGTTAAATACGCTCTTCATGGCTATGGAGCACTACCCCATGACTG
AACATTTCAACCATGTTCTTACAGTGGGAAACTTGGTCTTCACTGGGATTTTCACAGCAGAAATGTTCCT
GAAAATCATCGCAATGGATCCTTACTATTACTTCCAAGAAGGCTGGAATATCTTTGATGGTTTCATTGTG
ACACTCAGCCTGGTAGAACTTGGCCTTGCCAATGTGGAAGGATTGTCAGTTCTCCGTTCATTTCGACTGC
TCCGAGTGTTCAAGTTGGCAAAGTCTTGGCCCACACTGAATATGCTCATTAAGATCATTGGTAACTCGGT
GGGAGCACTGGGCAACCTGACTCTGGTGTTGGCCATCATTGTCTTTATTTTTGCCGTGGTTGGCATGCAG
CTGTTTGGAAAAAGTTACAAAGATTGTGTCTGCAAAATTGCCACTGACTGCAAACTCCCACGTTGGCACA
TGAACGACTTCTTCCACTCGTTCCTGATCGTGTTCCGCGTGCTGTGTGGGGAGTGGATAGAGACCATGTG
GGACTGCATGGAGGTGGCAGGACAAGCTATGTGCCTTACTGTCTTCATGATGGTCATGGTGATTGGGAAC
CTTGTGGTCTTGAACCTCTTTCTGGCCTTGCTTCTGAGCTCATTTAGTGCAGACAACCTTGCAGCCACTG
ATGATGACAATGAGATGAACAACCTGCAGATTGCTGTGGACAGGATGCACAAAGGAATAGCTTATGTAAA
AAGAAAAATATATGAATTCATTCAACAATCCTTTGTTAAGAAACAGAAGATTCTAGATGAAATTAAGCCA
CTTGATGATCTAAACAACAGAAAAGACAATTGTATCTCTAACCACACAACAGAAATTGGGAAAGATCTGG
ACTGTCTGAAAGATGTGAATGGAACCACAAGTGGCATAGGGACGGGCAGCAGTGTGGAGAAGTACATCAT
TGATGAGAGTGATTATATGTCATTCATAAACAACCCCAGCCTCACTGTGACTGTGCCCATTGCTGTGGGA
GAGTCTGACTTTGAGAACTTAAACACAGAAGACTTTAGCAGTGAATCAGATCTAGAAGAAAGCAAAGAGA
AACTCAACGAAAGCAGTAGCTCCTCAGAGGGAAGCACAGTAGACATTGGGGCGCCTGCAGAGGAACAGCC
TGTCATTGAACCAGAAGAAACCCTTGAGCCCGAAGCTTGCTTCACTGAAGGCTGTGTCCAGAGATTCAAG
TGCTGTCAAATCAGCGTGGAAGAAGGAAGAGGGAAACAGTGGTGGAACCTACGGAGGACGTGCTTCCGAA
TAGTTGAACACAACTGGTTTGAGACCTTCATTGTGTTCATGATTCTCCTGAGTAGTGGTGCCCTGGCCTT
TGAGGATATATATATTGATCAGCGAAAGACGATCAAAACCATGCTGGAGTATGCTGACAAAGTCTTCACT
TACATTTTCATCCTGGAGATGCTCCTCAAATGGGTGGCCTATGGCTATCAAACATACTTCACCAATGCCT
GGTGTTGGCTAGACTTCTTAATTGTTGATGTTTCATTGGTCAGTTTAACAGCAAATGCCTTGGGTTACTC
TGAACTCGGGGCCATCAAATCCCTAAGGACACTAAGAGCTCTGAGACCCCTAAGAGCCTTATCACGATTT
GAAGGGATGAGGGTGGTTGTGAATGCCCTGTTAGGAGCAATTCCATCCATCATGAATGTGCTTCTGGTTT
GCCTTATATTCTGGCTAATTTTCAGCATCATGGGCGTAAATTTGTTTGCTGGCAAATTCTACCACTGTGT
TAACACCACAACTGGTGACATATTTGAGATCAGCGAAGTCAATAATCATTCTGATTGCCTAAAACTAATA
GAAAGAAATGAGACCGCCCGGTGGAAAAATGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTT
CTTTGCTTCAAGTTGCCACATTTAAGGGCTGGATGGATATCATGTATGCTGCAGTTGATTCCAGAAATGT
TGAACTACAGCCTAAGTATGAGGAAAGCCTGTACATGTATTTGTACTTCGTCATCTTCATCATCTTCGGG
TCCTTCTTTACCCTGAACCTGTTTATTGGTGTCATTATCGACAATTTCAACCAGCAAAAGAAGAAGTTTG
GAGGTCAAGACATCTTTATGACAGAAGAACAGAAGAAATACTATAATGCAATGAAGAAATTAGGATCAAA
AAAGCCACAAAAGCCTATCCCTCGACCTGGAAACAAATTTCAAGGAATGGTTTTTGACTTTGTAACCAGA
CAAGTGTTTGATATCAGCATCATGATCCTCATCTGTCTGAACATGGTGACCATGATGGTGGAAACGGATG
ACCAGAGCGATTATGTGACAAGCATTTTGTCACGCATCAACCTGGTGTTCATCGTCCTGTTCACCGGCGA
GTGTGTGCTCAAGCTCATCTCGCTCCGCCATTATTATTTCACCATTGGATGGAACATTTTCGATTTTGTG
GTGGTCATCCTCTCCATTGTAGGGATGTTTCTTGCGGAGCTAATAGAAAAGTATTTTGTGTCTCCTACCC
TGTTCCGAGTCATCCGCCTGGCCAGGATTGGACGAATCCTACGCCTGATCAAAGGTGCCAAGGGGATCCG
CACGCTGCTCTTTGCTCTGATGATGTCCCTTCCTGCGCTGTTTAACATCGGCCTCCTGCTTTTTCTCGTC
ATGTTCATCTACGCCATCTTTGGGATGTCCAACTTTGCCTATGTTAAGAGGGAAGTTGGGATTGATGACA
TGTTCAACTTTGAGACCTTCGGCAACAGCATGATCTGCCTGTTCCAAATCACCACCTCTGCGGGCTGGGA
TGGACTGCTGGCCCCCATCCTCAACAGCAAACCCCCTGACTGTGACCCTAATAAAGTTAACCCTGGAAGC
TCGGTGAAGGGAGACTGTGGGAACCCATCTGTGGGGATTTTCTTTTTTGTCAGCTACATCATCATATCCT
TCCTGGTTGTGGTGAACATGTACATTGCTGTCATCCTGGAGAACTTCAGCGTTGCCACAGAAGAAAGTGC
AGAGCCTCTGAGTGAGGACGACTTTGAGATGTTCTACGAGGTCTGGGAGAAGTTCGACCCTGACGCCACC
CAGTTCATGGAATTTGAAAAATTATCTCAGTTTGCAGCTGCTCTAGAACCCCCTCTCAATTTGCCACAAC
CAAACAAACTTCAGCTCATTGCCATGGACCTGCCCATGGTGAGTGGAGACCGCATCCACTGCCTGGACAT
CTTATTTGCTTTTACAAAGCGGGTGTTGGGTGAGAGTGGAGAGATGGATGCTCTTCGAATCCAGATGGAA
GAGCGGTTCATGGCTTCCAACCCCTCCAAGGTCTCTTATCAGCCCATCACTACTACATTAAAACGCAAAC
AAGAGGAGGTGTCAGCTGTTATCATTCAGCGAGCTTATAGGCGCCACCTTTTGAAGCGAACAGTAAAACA
AGCTTCATTCACATACAATAAGAACAAACTCAAAGGTGGGGCTAATCTTCTTGTAAAAGAAGACATGCTC
ATTGACAGAATAAACGAAAACTCTATTACGGAGAAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGC
CCTCCTACGATCGGGTGACAAAGCCAATCGTGGAGAAACACGAGCAGGAAGGGAAGGATGAAAAAGCCAA
AGGGAAATGA

Translation (2009 aa):
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKNLPFIYGDIPP
EMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILT
NCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVDLG
NVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQW
PPTNASLEEHSIEKNITMDYNGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYM
CVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAATTASEHSREPSAAGRLSDSSSEASKLS
SKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQSLLSIR
GSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVPRRHGERRNSNLSQTSRSSR
MLAVFPANGKMHSTVDCNGVVSLVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVS
MDFLEDPSQRQRAMSIASILTNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFV
DLAITICIVLNTLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQ
LFGKSYKDCVCKIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLTVFMMVMVIGN
LVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMHKGIAYVKRKIYEFIQQSFVKKQKILDEIKP
LDDLNNRKDNCISNHTTEIGKDLDCLKDVNGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVG
ESDFENLNTEDFSSESDLEESKEKLNESSSSSEGSTVDIGAPAEEQPVIEPEETLEPEACFTEGCVQRFK
CCQISVEEGRGKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRF
EGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGDIFEISEVNNHSDCLKLI
ERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFG
SFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTR
QVFDISIMILICLNMVTMMVETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFV
VVILSIVGMFLAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPNKVNPGS
SVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDAT
QFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQME
ERFMASNPSKVSYQPITTTLKRKQEEVSAVIIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDML
IDRINENSITEKTDLTMSTAACPPSYDRVTKPIVEKHEQEGKDEKAKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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