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Report for CCDS84548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84548.1 Public Mus musculus 2 Mtch2 23 108 98 CCDS HistoryNCBI Gene:56428Re-query CCDS DB by CCDS ID:84548.1Re-query CCDS DB by GeneID:56428See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111467.3 ENSMUSP00000107092.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111467.3Link to Ensembl Protein Viewer:ENSMUSP00000107092.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111467Re-query CCDS DB by Protein ID:ENSMUSP00000107092
Original member Current member NCBI NM_001317243.1 NP_001304172.1 Accepted alive Link to Nucleotide Sequence:NM_001317243.1Link to Protein Sequence:NP_001304172.1Re-query CCDS DB by Nucleotide ID:NM_001317243Re-query CCDS DB by Protein ID:NP_001304172Link to BLAST:NP_001304172.1

Chromosomal Locations for CCDS 84548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 90847299 90847385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90849371 90849455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90849598 90849704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90853051 90853113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90854924 90854981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90855436 90855487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90856806 90856865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90859476 90859569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90860463 90860510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90861382 90861449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90863590 90863665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 90865184 90865270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGCGGACGCGGCCAGTCAGGTGCTCCTGGGCTCCGGTCTCACCATCCTGTCCCAGCCGCTCATGTACG
TGAAAGTGCTCATCCAGGTGGGATATGAGCCTCTTCCTCCAACAATAGGACGAAATATTTTTGGGCGACA
AGTATGTCAGCTTCCTGGCCTCTTTTGCTATGCTCAGCACATTGCAAGCATCGATGGGAGGCGTGGGTTG
TTCACAGGCTTGACTCCAAGACTGTGTTCAGGAGTCCTTGGAACTGTGGTCCATGGGAAAGTCTTACAGG
AGTTAGGATCTGTAACTGTACAAAAAGAATATTCATCCTCCTTTGACCGAGTTATCAAAGAGACAACTCG
AGAGATGATTGCTCGTTCTGCTGCTACCCTCATTACACATCCCTTCCACGTGATCACTCTGAGGTCCATG
GTACAGTTTATTGGCAGAGAGTCTAAGTACTGTGGACTGTGTGACTCCATAGTAACCATCTACCGGGAAG
AAGGCATCGTAGGATTTTTTGCGGGTCTCATTCCTCGCCTCCTAGGTGACATCATTTCTTTGTGGCTGTG
TAACTCACTGGCCTATCTCATCAATACCTATGCACTGGACAGTGGGGTTTCTACCATGAATGAAATGAAA
AGTTACTCCCAAGCTGTCACAGGATTCTTTGCCAGTATGTTGACATATCCCTTTGTGCTTGTATCTAATC
TTATGGCCGTCAACAACTGTGGGCTTGCTGGTGGATCTCCTCCTTATTCCCCAATATACACTTCTTGGAT
AGATTGCTGGTGCATGCTACAAAAAGCGGGAAATATGAGCCGAGGAAACAGCTTGTTTTTCCGGAAGGTT
CCTTGTGGGAAGACTTACTGTTATGACCTAAGAATGTTAATCTGA

Translation (294 aa):
MADAASQVLLGSGLTILSQPLMYVKVLIQVGYEPLPPTIGRNIFGRQVCQLPGLFCYAQHIASIDGRRGL
FTGLTPRLCSGVLGTVVHGKVLQELGSVTVQKEYSSSFDRVIKETTREMIARSAATLITHPFHVITLRSM
VQFIGRESKYCGLCDSIVTIYREEGIVGFFAGLIPRLLGDIISLWLCNSLAYLINTYALDSGVSTMNEMK
SYSQAVTGFFASMLTYPFVLVSNLMAVNNCGLAGGSPPYSPIYTSWIDCWCMLQKAGNMSRGNSLFFRKV
PCGKTYCYDLRMLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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