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Report for CCDS84900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84900.1 Public Mus musculus 5 Csn1s2a 23 108 98 CCDS HistoryNCBI Gene:12993Re-query CCDS DB by CCDS ID:84900.1Re-query CCDS DB by GeneID:12993See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196585.1 ENSMUSP00000143515.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196585.1Link to Ensembl Protein Viewer:ENSMUSP00000143515.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196585Re-query CCDS DB by Protein ID:ENSMUSP00000143515
Original member Current member NCBI NM_001304768.1 NP_001291697.1 Accepted alive Link to Nucleotide Sequence:NM_001304768.1Link to Protein Sequence:NP_001291697.1Re-query CCDS DB by Nucleotide ID:NM_001304768Re-query CCDS DB by Protein ID:NP_001291697Link to BLAST:NP_001291697.1

Chromosomal Locations for CCDS 84900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87775787 87775837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87777443 87777469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87778057 87778083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87778172 87778213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87778957 87778983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87780003 87780026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87781763 87781888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87784565 87784588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87785287 87785313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87786590 87786712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87787729 87787740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGAAGTTCTTCATCTTTGCCTGCCTGGTGGTTGTTGCTCTGGCAAAGCACGAAATAAAGGATAAGTCCT
CCAGTGAGGAATCATCTGCCAGCATCTACCCAGGAAAGTCTAAGCTGGACAATAGCGTGTTCTTCCAAAC
AACTAAGGATTCTGCTAGCAGTTCATCCAGTGAGGAATCTTCCGAGGAAGTCAGTGAAAAAAAATTCAAG
CAATTTTCCCAGGAGTCTTCCTTTTCCCAATGTTGCACACCTCTTCACCAGCAGCAGCAGAGCAGTGTGA
ACCAGTGGCCCCAGCCTAATGCCATCCATAACACGCCCACCCAGGAATCCATCAGCACCTCTGTGGAGGA
AATCCTGAAGAAGATTATTGATATGATCAAGTACATCCAATATCAACAGGTCACCATCCCCCAACTTCCC
CAAGCTCTTCATCCCCAGATACCTGTGAGCTACTGGTACCCCAGTAAGGATTACACCTTCCCAAATGCTC
ACTATACGAGATTCTACTAA

Translation (169 aa):
MKFFIFACLVVVALAKHEIKDKSSSEESSASIYPGKSKLDNSVFFQTTKDSASSSSSEESSEEVSEKKFK
QFSQESSFSQCCTPLHQQQQSSVNQWPQPNAIHNTPTQESISTSVEEILKKIIDMIKYIQYQQVTIPQLP
QALHPQIPVSYWYPSKDYTFPNAHYTRFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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