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Report for CCDS84970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84970.1 Public Mus musculus 5 Mettl27 23 108 98 CCDS HistoryNCBI Gene:79565Re-query CCDS DB by CCDS ID:84970.1Re-query CCDS DB by GeneID:79565See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068617.11 ENSMUSP00000067814.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068617.11Link to Ensembl Protein Viewer:ENSMUSP00000067814.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068617Re-query CCDS DB by Protein ID:ENSMUSP00000067814
Original member Current member EBI ENSMUST00000111221.8 ENSMUSP00000106852.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111221.8Link to Ensembl Protein Viewer:ENSMUSP00000106852.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111221Re-query CCDS DB by Protein ID:ENSMUSP00000106852
Original member Current member NCBI NM_001347490.1 NP_001334419.1 Accepted alive Link to Nucleotide Sequence:NM_001347490.1Link to Protein Sequence:NP_001334419.1Re-query CCDS DB by Nucleotide ID:NM_001347490Re-query CCDS DB by Protein ID:NP_001334419Link to BLAST:NP_001334419.1
Original member Current member NCBI NM_001359538.1 NP_001346467.1 Accepted alive Link to Nucleotide Sequence:NM_001359538.1Link to Protein Sequence:NP_001346467.1Re-query CCDS DB by Nucleotide ID:NM_001359538Re-query CCDS DB by Protein ID:NP_001346467Link to BLAST:NP_001346467.1

Chromosomal Locations for CCDS 84970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134932725 134932847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134933473 134933601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134934289 134934424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134940457 134940692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGACTCAGGAGGAGGCTGGGCGGCTGCCCCAAGTACTGGCCCGGGTCGGAACCTCCCACGGTATCACCG
ACCTGGCCTGCAAGCTCCGCTTCTATGACGACTGGGCTCCGGAGTATGACCAGGATGTGGCTGCTTTGAA
GTACCGAGCCCCACGCCTTGCTGTGGATTGTCTCAGTCGAGCCTTTCGGGGCTCACCCCATGATGCCCTG
ATCCTCGATGTGGCCTGTGGCACTGGCCTGGTAGCTGTGGAGCTGCAGGCTCGGGGCTTCCTCCAGGTGC
AGGGCGTGGATGGAAGCCCAGAAATGCTGAAGCAGGCGCGGGCACGTGGCCTGTACCACCACCTTAGCCT
CTGTACCCTGGGCCAGGAGCCACTGCCCGACCCTGAAGGTGGACTTGTTTGTCTGACTACCAGGACCAAC
CCATCCAACCTTCCATACAAGGAGACGCTGGAAGCGACCTTAGACTCCCTGGAGCGGGCTGGAGTGTGGG
AATGCCTGGTGACCCAGCCTGTGGACCACTGGGAGCTAGCAACATCAGAACAAGAGACAGGGCTAGGCAC
CTGTGCCAATGATGGCTTCATCTCTGGCATCATCTACCTTTACCGGAAGCAGGAGACAGTATAG

Translation (207 aa):
MTQEEAGRLPQVLARVGTSHGITDLACKLRFYDDWAPEYDQDVAALKYRAPRLAVDCLSRAFRGSPHDAL
ILDVACGTGLVAVELQARGFLQVQGVDGSPEMLKQARARGLYHHLSLCTLGQEPLPDPEGGLVCLTTRTN
PSNLPYKETLEATLDSLERAGVWECLVTQPVDHWELATSEQETGLGTCANDGFISGIIYLYRKQETV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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