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Report for CCDS850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
850.1 Public Homo sapiens 1 ST7L 24 110 108 CCDS HistoryNCBI Gene:54879Re-query CCDS DB by CCDS ID:850.1Re-query CCDS DB by GeneID:54879See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 850.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360743.8 ENSP00000353972.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360743.8Link to Ensembl Protein Viewer:ENSP00000353972.4Re-query CCDS DB by Nucleotide ID:ENST00000360743Re-query CCDS DB by Protein ID:ENSP00000353972
Original member Current member NCBI NM_138728.3 NP_620056.1 Accepted alive Link to Nucleotide Sequence:NM_138728.3Link to Protein Sequence:NP_620056.1Re-query CCDS DB by Nucleotide ID:NM_138728Re-query CCDS DB by Protein ID:NP_620056Link to BLAST:NP_620056.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620056.1 544 Q8TDW4-2 544 100% 0 0

Chromosomal Locations for CCDS 850.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 112526013 112526111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112541951 112542090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112555868 112556018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112576986 112577088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112578345 112578417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112581992 112582106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112582375 112582472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112583972 112584126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112591525 112591603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112597971 112598086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112600794 112600848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112610841 112611003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112616813 112616895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112618909 112619113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGGCGGACCGTGGCGGCGTGGGTGAAGCCGCAGCTGTTGGAGCGTCTCCTGCATCTGTCCCTGGCCTAA
ACCCGACGCTAGGCTGGAGGGAGCGACTGCGGGCCGGGCTGGCGGGGACTGGGGCCTCGTTGTGGTTCGT
GGCGGGGCTGGGGCTGCTTTACGCCCTGAGGATCCCTTTGAGGCTGTGTGAGAATTTGGCAGCGGTGACT
GTATTTTTAAATTCATTGACACCCAAATTCTATGTGGCACTTACAGGGACCTCTTCATTGATATCAGGAC
TAATATTTATATTTGAATGGTGGTACTTCCATAAGCATGGCACATCTTTTATTGAGCAAGTATCTGTAAG
CCATTTGCAACCACTGATGGGAGGAACAGAGAGCAGCATTTCAGAACCAGGTTCTCCTTCGAGGAACAGA
GAAAATGAAACCAGCAGACAGAATTTGTCAGAATGTAAGGTATGGAGAAACCCTCTAAATCTTTTCAGAG
GAGCAGAATATAGGAGATACACTTGGGTGACTGGTAAAGAGCCACTTACATACTATGACATGAACCTGTC
AGCTCAGGACCATCAGACCTTTTTCACCTGTGACACAGATTTTTTACGTCCTTCAGACACAGTTATGCAG
AAGGCTTGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCAGCCTATCAAGCTTTAGAATTAAACAATG
ACTGTGCCACTGCATATGTTCTACTGGCTGAGGAAGAAGCAACAACTATTGTAGATGCTGAAAGGTTATT
TAAACAGGCACTCAAGGCAGGAGAAACAATTTATAGGCAGTCACAGCAGTGCCAGCACCAAAGTCCTCAG
CATGAAGCTCAACTGAGGAGAGATACCAATGTACTGGTATATATTAAAAGAAGATTGGCAATGTGTGCAA
GAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATGAGAGATTTGATGAAAGAATTTCCTCCTCTTAC
CATGTTGAACATCCATGAAAATCTCTTAGAATCACTTTTAGAATTACAGGCCTATCCAGATGTTCAGGCA
GTCCTAGCAAAATATGATGATATAAGCCTTCCAAAGTCAGCAGCAATCTGTTACACAGCAGCACTGTTGA
AGACAAGGACTGTTTCAGAAAAATTCTCTCCAGAAACAGCCTCCAGAAGAGGATTAAGCACAGCAGAAAT
TAATGCCGTGGAAGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAAATATTTATTAGAGATG
AAAAGTTTAATTTTACCTCCAGAACACATTCTGAAACGGGGTGATAGTGAAGCAATTGCCTATGCTTTCT
TTCATCTTCAGCACTGGAAACGAATAGAAGGTGCTCTTAATCTGTTACAGTGTACATGGGAAGGCACCTT
TCATCATGTTTCTGTTTACCCAAAAAAGGAGCTTCCTTTGTTCATCCATTTCACAGCAGGATTTTGCTCT
TCTACAGCAATGATAGCCATTCTCACTCACCAGTTTCCTGAAATCATGGGTATTTTTGCTAAAGCTGTGC
TGGGACTCTGGTGCCCCCAACCCTGGGCATCCTCAGGCTTTGAGGAGAATACACAGGATTTGAAGTCAGA
AGACCTAGGTTTGAGTTCTGGCTGA

Translation (544 aa):
MADRGGVGEAAAVGASPASVPGLNPTLGWRERLRAGLAGTGASLWFVAGLGLLYALRIPLRLCENLAAVT
VFLNSLTPKFYVALTGTSSLISGLIFIFEWWYFHKHGTSFIEQVSVSHLQPLMGGTESSISEPGSPSRNR
ENETSRQNLSECKVWRNPLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCDTDFLRPSDTVMQ
KAWRERNPPARIKAAYQALELNNDCATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQ
HEAQLRRDTNVLVYIKRRLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYPDVQA
VLAKYDDISLPKSAAICYTAALLKTRTVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM
KSLILPPEHILKRGDSEAIAYAFFHLQHWKRIEGALNLLQCTWEGTFHHVSVYPKKELPLFIHFTAGFCS
STAMIAILTHQFPEIMGIFAKAVLGLWCPQPWASSGFEENTQDLKSEDLGLSSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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