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Report for CCDS85101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85101.1 Public Mus musculus 6 Frmd4b 23 108 98 CCDS HistoryNCBI Gene:232288Re-query CCDS DB by CCDS ID:85101.1Re-query CCDS DB by GeneID:232288See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113359.7 ENSMUSP00000108986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113359.7Link to Ensembl Protein Viewer:ENSMUSP00000108986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113359Re-query CCDS DB by Protein ID:ENSMUSP00000108986
Original member Current member NCBI NM_001346639.1 NP_001333568.1 Accepted alive Link to Nucleotide Sequence:NM_001346639.1Link to Protein Sequence:NP_001333568.1Re-query CCDS DB by Nucleotide ID:NM_001346639Re-query CCDS DB by Protein ID:NP_001333568Link to BLAST:NP_001333568.1

Chromosomal Locations for CCDS 85101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 97288360 97288480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97292363 97292495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97295576 97296387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97298035 97298154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97300209 97300356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97302289 97302345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97305147 97305375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97306479 97306598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97306679 97306812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97308027 97308168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97308614 97308752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97310663 97310739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97323655 97323741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97325433 97325490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97328233 97328298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97329481 97329564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97353182 97353204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97354005 97354061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97396193 97396277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97412488 97412580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97421562 97421656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97423459 97423524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97459194 97459217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2970 nt):
ATGAGTCTCAATCATGGATTGGAGATGACAGAAGGCAGGCACTGCCAGGTTCACCTGCTGGATGACAGAA
GACTGGAGCTGCTGGTTCAGCCCAAGCTTTTATCAAGAGAGCTGCTGGACCTCGTGGCGTCGCATTTCAA
CCTGAAAGAGAAGGAGTACTTTGGAATAACGTTTATAGACGACACGGGTCAAGAGAACTGGTTGCAGCTG
GACCACAGAGTTCTGGAACATGATTTACCTAAGAAGCCCGGCCCAACTCTTCTGCACTTCGCTGTCAGGT
TCTACATCGAGAGCATATCCTTCCTAAAGGATAAGAACACCGTGGAGCTGTTTTTCCTGAACGCAAAGGC
CTGTGTACACAAGGGGCAAATTGAAGTAGACAGTGAGACCATCTTCAAGTTGGCAGCCCTGGTTTTGCAG
GAAAGCAAGGGAGATTATACCAGCGATGAGAATGCCAGGAAAGACTTGAAGACACTGCCAGTCTTTCCAA
CCAAAACCCTTCAGGAACATCCATCCCTCGCTTACTGTGAGGACAGAGTGATTGAGCATTATTTGAAAAT
CAAAGGTCTCACTCGGGGTCAAGCTGTGGTCCAGTATATGAAAATAGTAGAAGCCCTACCAACGTATGGA
GTCCATTACTATGCAGTGAAGGATAAGCAGGGACTTCCATGGTGGCTTGGTATCAGCTACAAAGGAATCG
GCCAGTATGACTTACAAGACAAGGTGAAGCCTCGCAAACTATTTCAATGGAAGCAGCTGGAAAATTTGTA
TTTCCGTGAGAAGAAATTTGCTGTGGAGGTGCACGATCCCCGAAGGATTTCAGTGTCTAGAAGAACCTTT
GGACAGAGTGGCCTGTTTGTACAAACCTGGTATGCAAACTCTTCTCTCATCAAGTCCATCTGGGTAATGG
CCATTAGCCAGCATCAGTTCTACCTGGACCGGAAGCAGAGCAAAGCAAAAATTCCTTCAGCCAGAAGCTT
AGACGACATCGCCATGGACTTAACAGAGACTGGAACACAGAGGGGCTCCAAACTGGTGACTCTGGAAGCA
AAGAGTCAGTTCATCATGGCAAGCAATGGCAGCCTGATATCCTCAGGTTCTCAGGACTCGGAAGGCATGG
AGGAGCAAAAGCGGGAGAAGATTCTGGAACTCAAGAAGAAGGAGAAGCTGTTGCAAGAAAAGCTCCTGCA
GAAAGTGGAGGAGCTGAAGAAGATCTGCCTGCGGGAGGCCGAGCTCACGGGCAGAATGCCAAAGGAGTAT
CCACTGAACATAGGCGAGAAGCCCCCTCAGGTCAGGAGGCGAGTGGGGACCACGTTCAAGTTAGATGACA
ACTTACTGCCTACTGAGGAGGATCCGGCTTTACAAGAACTGGAGAGCAATTTCCTGATACAGCAGAAGCT
GGTTGAGGCTGCAAAGAAGCTCGCCAGTGAGCCCGACCTTTGTAAAACCGTGAAGAAAAAGCGAAAGCAA
GATTACACAGACGCTGTGAAAAGACTGCAGGAGATTGAAAATTCCATCAACGAATACCGAATCCGATGTG
GCAAGAAGCCCAGCCAGAAGGCTGCCGTTGTCCCACCAGAAGACATCATTCCATCGGAAAGCAGTTCTTT
GTCCGACACCACCACCTATGACGACCCCAATGACTCCTTCACTCTTGCTGGGCAGCGACCAAGTTCAGTA
CCTCATTCTCCAAGAATTCTACCCCCCAAGTCTCTCGGAATTGAGCGAATCCACTTCAGAAAATCCTCCA
TCAACGAACAGTTCATGGACACCAGGCATTCCAGAGAAATGCTGTCCACACACAGCAGCCCTTACAAGAC
TCTGGAGAGGCGGCCACAGGGAGGACGGAGCATGCCCACTACGCCCGTCCTGACTCGGAATGCCTACAGC
AGCAGCCACCTGGAACCTGACTCCTCATCTCAACACTGCCGCCAGCGGAGCGGAAGCCTGGAGTCCCAGT
CCCACCTGCTCTCCGAGATGGACAGTGACAAGCCATTTTTCACCCTCTCCAAATCCCAAAGAAGCAGCAG
CACGGAGATCCTTGACGACGGGTCTTCGTATACCAGCCAGTCAAGCTCCGAGTATTACTGTGTGACGCCT
GCTGCCAGCCCTTACTACACCACCCAGACCCTAGACACCCGTGCCAGGGGGAGAAGAAGGTCCAAGAAAC
ACAGTGTTTCTACTTCCAATTCAGGAAGCATGCCCAACCTAGCACAAAAGGATCCTTTGAGGAACGGTGT
CTACTCCAAAGGTCAGGACCCACCTCCTTCCGGTTACTATATCGCTGGATATCCACCGTATGCAGAGTGT
GACCTGTATTACAGTGGTGGCTACGTCTACGAGAATGACACTGAGGGACAGTACAGTGTCAATCCTTCTT
ACCGATCCTCAGCTCACTATGGATATGACCGCCAGAGGGACTACAGCAGGTCTTTCCATGAAGATGAAGT
AGACCGCGTGCCACATAACCCATACGCAACTCTCCGGCTGCCAAGGAAGGCGGCCGTGAAATCTGAGCAC
ATCACCAAAAACATCCACAAGGCCTTAGTTGCTGAGCACCTGCGTGGCTGGTACCAGAGGGCTTCTGGAC
AAAAGGATCAGGGGCACAGCCCACAGACGAGCTTTGACTCAGACAGGGGATCGCAGAGGTGCCTGGGATT
TGCAGGGCTGCAGGTCCCCTGTTCTCCAAGCAGTCGAGCATCTTCCTACTCTTCAGTGTCTTCCACAAAT
GCTTCTGGGAACTGGAGGACCCAGTTAACCATTGGGCTATCTGAATATGAAAATCCAGTGCATTCTCCCT
ACACCAGCTACTATGGCAGCATCTACAATCCCTTGTCCTCTCCGAGCAGACAGTATGCAGAGACCACTCC
ACTGGACGGTACAGACGGAAGCCAGCTGGAAGACAACCTGGAGGGTAGTGAACAGAGGCTTTTTTGGCAC
GAAGACTCCAAGCCTGGAACATTAGTCTGA

Translation (989 aa):
MSLNHGLEMTEGRHCQVHLLDDRRLELLVQPKLLSRELLDLVASHFNLKEKEYFGITFIDDTGQENWLQL
DHRVLEHDLPKKPGPTLLHFAVRFYIESISFLKDKNTVELFFLNAKACVHKGQIEVDSETIFKLAALVLQ
ESKGDYTSDENARKDLKTLPVFPTKTLQEHPSLAYCEDRVIEHYLKIKGLTRGQAVVQYMKIVEALPTYG
VHYYAVKDKQGLPWWLGISYKGIGQYDLQDKVKPRKLFQWKQLENLYFREKKFAVEVHDPRRISVSRRTF
GQSGLFVQTWYANSSLIKSIWVMAISQHQFYLDRKQSKAKIPSARSLDDIAMDLTETGTQRGSKLVTLEA
KSQFIMASNGSLISSGSQDSEGMEEQKREKILELKKKEKLLQEKLLQKVEELKKICLREAELTGRMPKEY
PLNIGEKPPQVRRRVGTTFKLDDNLLPTEEDPALQELESNFLIQQKLVEAAKKLASEPDLCKTVKKKRKQ
DYTDAVKRLQEIENSINEYRIRCGKKPSQKAAVVPPEDIIPSESSSLSDTTTYDDPNDSFTLAGQRPSSV
PHSPRILPPKSLGIERIHFRKSSINEQFMDTRHSREMLSTHSSPYKTLERRPQGGRSMPTTPVLTRNAYS
SSHLEPDSSSQHCRQRSGSLESQSHLLSEMDSDKPFFTLSKSQRSSSTEILDDGSSYTSQSSSEYYCVTP
AASPYYTTQTLDTRARGRRRSKKHSVSTSNSGSMPNLAQKDPLRNGVYSKGQDPPPSGYYIAGYPPYAEC
DLYYSGGYVYENDTEGQYSVNPSYRSSAHYGYDRQRDYSRSFHEDEVDRVPHNPYATLRLPRKAAVKSEH
ITKNIHKALVAEHLRGWYQRASGQKDQGHSPQTSFDSDRGSQRCLGFAGLQVPCSPSSRASSYSSVSSTN
ASGNWRTQLTIGLSEYENPVHSPYTSYYGSIYNPLSSPSRQYAETTPLDGTDGSQLEDNLEGSEQRLFWH
EDSKPGTLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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