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Report for CCDS85102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85102.1 Public Mus musculus 6 Frmd4b 23 108 98 CCDS HistoryNCBI Gene:232288Re-query CCDS DB by CCDS ID:85102.1Re-query CCDS DB by GeneID:232288See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032146.13 ENSMUSP00000032146.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032146.13Link to Ensembl Protein Viewer:ENSMUSP00000032146.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032146Re-query CCDS DB by Protein ID:ENSMUSP00000032146
Original member Current member NCBI NM_001346637.1 NP_001333566.1 Accepted alive Link to Nucleotide Sequence:NM_001346637.1Link to Protein Sequence:NP_001333566.1Re-query CCDS DB by Nucleotide ID:NM_001346637Re-query CCDS DB by Protein ID:NP_001333566Link to BLAST:NP_001333566.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333566.1 1035 Q920B0-1 1035 100% 0 0

Chromosomal Locations for CCDS 85102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 97288360 97288480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97292363 97292495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97295576 97296387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97298035 97298154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97300209 97300356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97302289 97302345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97305147 97305375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97306479 97306598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97306679 97306812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97308027 97308168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97308614 97308752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97310663 97310739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97323655 97323741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97325433 97325490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97328233 97328298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97329481 97329564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97353182 97353204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97354005 97354061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97396193 97396277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97412488 97412580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97421562 97421656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97423459 97423524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 97487593 97487754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3108 nt):
ATGGCTTCGGTGTTCATGTGCGGAGTGGAGGACCTGCTGTTCAGCGGCAGCCGCTTCGTGTGGAACTTGA
CCGTGTCCACGCTGCGGAGATGGTACACCGAGAGGCTGCGGGCTTGCCACCAGGTGCTGCGGACGTGGTG
CGGGCTGCGGGATGTGTACCAGATGACAGAAGGCAGGCACTGCCAGGTTCACCTGCTGGATGACAGAAGA
CTGGAGCTGCTGGTTCAGCCCAAGCTTTTATCAAGAGAGCTGCTGGACCTCGTGGCGTCGCATTTCAACC
TGAAAGAGAAGGAGTACTTTGGAATAACGTTTATAGACGACACGGGTCAAGAGAACTGGTTGCAGCTGGA
CCACAGAGTTCTGGAACATGATTTACCTAAGAAGCCCGGCCCAACTCTTCTGCACTTCGCTGTCAGGTTC
TACATCGAGAGCATATCCTTCCTAAAGGATAAGAACACCGTGGAGCTGTTTTTCCTGAACGCAAAGGCCT
GTGTACACAAGGGGCAAATTGAAGTAGACAGTGAGACCATCTTCAAGTTGGCAGCCCTGGTTTTGCAGGA
AAGCAAGGGAGATTATACCAGCGATGAGAATGCCAGGAAAGACTTGAAGACACTGCCAGTCTTTCCAACC
AAAACCCTTCAGGAACATCCATCCCTCGCTTACTGTGAGGACAGAGTGATTGAGCATTATTTGAAAATCA
AAGGTCTCACTCGGGGTCAAGCTGTGGTCCAGTATATGAAAATAGTAGAAGCCCTACCAACGTATGGAGT
CCATTACTATGCAGTGAAGGATAAGCAGGGACTTCCATGGTGGCTTGGTATCAGCTACAAAGGAATCGGC
CAGTATGACTTACAAGACAAGGTGAAGCCTCGCAAACTATTTCAATGGAAGCAGCTGGAAAATTTGTATT
TCCGTGAGAAGAAATTTGCTGTGGAGGTGCACGATCCCCGAAGGATTTCAGTGTCTAGAAGAACCTTTGG
ACAGAGTGGCCTGTTTGTACAAACCTGGTATGCAAACTCTTCTCTCATCAAGTCCATCTGGGTAATGGCC
ATTAGCCAGCATCAGTTCTACCTGGACCGGAAGCAGAGCAAAGCAAAAATTCCTTCAGCCAGAAGCTTAG
ACGACATCGCCATGGACTTAACAGAGACTGGAACACAGAGGGGCTCCAAACTGGTGACTCTGGAAGCAAA
GAGTCAGTTCATCATGGCAAGCAATGGCAGCCTGATATCCTCAGGTTCTCAGGACTCGGAAGGCATGGAG
GAGCAAAAGCGGGAGAAGATTCTGGAACTCAAGAAGAAGGAGAAGCTGTTGCAAGAAAAGCTCCTGCAGA
AAGTGGAGGAGCTGAAGAAGATCTGCCTGCGGGAGGCCGAGCTCACGGGCAGAATGCCAAAGGAGTATCC
ACTGAACATAGGCGAGAAGCCCCCTCAGGTCAGGAGGCGAGTGGGGACCACGTTCAAGTTAGATGACAAC
TTACTGCCTACTGAGGAGGATCCGGCTTTACAAGAACTGGAGAGCAATTTCCTGATACAGCAGAAGCTGG
TTGAGGCTGCAAAGAAGCTCGCCAGTGAGCCCGACCTTTGTAAAACCGTGAAGAAAAAGCGAAAGCAAGA
TTACACAGACGCTGTGAAAAGACTGCAGGAGATTGAAAATTCCATCAACGAATACCGAATCCGATGTGGC
AAGAAGCCCAGCCAGAAGGCTGCCGTTGTCCCACCAGAAGACATCATTCCATCGGAAAGCAGTTCTTTGT
CCGACACCACCACCTATGACGACCCCAATGACTCCTTCACTCTTGCTGGGCAGCGACCAAGTTCAGTACC
TCATTCTCCAAGAATTCTACCCCCCAAGTCTCTCGGAATTGAGCGAATCCACTTCAGAAAATCCTCCATC
AACGAACAGTTCATGGACACCAGGCATTCCAGAGAAATGCTGTCCACACACAGCAGCCCTTACAAGACTC
TGGAGAGGCGGCCACAGGGAGGACGGAGCATGCCCACTACGCCCGTCCTGACTCGGAATGCCTACAGCAG
CAGCCACCTGGAACCTGACTCCTCATCTCAACACTGCCGCCAGCGGAGCGGAAGCCTGGAGTCCCAGTCC
CACCTGCTCTCCGAGATGGACAGTGACAAGCCATTTTTCACCCTCTCCAAATCCCAAAGAAGCAGCAGCA
CGGAGATCCTTGACGACGGGTCTTCGTATACCAGCCAGTCAAGCTCCGAGTATTACTGTGTGACGCCTGC
TGCCAGCCCTTACTACACCACCCAGACCCTAGACACCCGTGCCAGGGGGAGAAGAAGGTCCAAGAAACAC
AGTGTTTCTACTTCCAATTCAGGAAGCATGCCCAACCTAGCACAAAAGGATCCTTTGAGGAACGGTGTCT
ACTCCAAAGGTCAGGACCCACCTCCTTCCGGTTACTATATCGCTGGATATCCACCGTATGCAGAGTGTGA
CCTGTATTACAGTGGTGGCTACGTCTACGAGAATGACACTGAGGGACAGTACAGTGTCAATCCTTCTTAC
CGATCCTCAGCTCACTATGGATATGACCGCCAGAGGGACTACAGCAGGTCTTTCCATGAAGATGAAGTAG
ACCGCGTGCCACATAACCCATACGCAACTCTCCGGCTGCCAAGGAAGGCGGCCGTGAAATCTGAGCACAT
CACCAAAAACATCCACAAGGCCTTAGTTGCTGAGCACCTGCGTGGCTGGTACCAGAGGGCTTCTGGACAA
AAGGATCAGGGGCACAGCCCACAGACGAGCTTTGACTCAGACAGGGGATCGCAGAGGTGCCTGGGATTTG
CAGGGCTGCAGGTCCCCTGTTCTCCAAGCAGTCGAGCATCTTCCTACTCTTCAGTGTCTTCCACAAATGC
TTCTGGGAACTGGAGGACCCAGTTAACCATTGGGCTATCTGAATATGAAAATCCAGTGCATTCTCCCTAC
ACCAGCTACTATGGCAGCATCTACAATCCCTTGTCCTCTCCGAGCAGACAGTATGCAGAGACCACTCCAC
TGGACGGTACAGACGGAAGCCAGCTGGAAGACAACCTGGAGGGTAGTGAACAGAGGCTTTTTTGGCACGA
AGACTCCAAGCCTGGAACATTAGTCTGA

Translation (1035 aa):
MASVFMCGVEDLLFSGSRFVWNLTVSTLRRWYTERLRACHQVLRTWCGLRDVYQMTEGRHCQVHLLDDRR
LELLVQPKLLSRELLDLVASHFNLKEKEYFGITFIDDTGQENWLQLDHRVLEHDLPKKPGPTLLHFAVRF
YIESISFLKDKNTVELFFLNAKACVHKGQIEVDSETIFKLAALVLQESKGDYTSDENARKDLKTLPVFPT
KTLQEHPSLAYCEDRVIEHYLKIKGLTRGQAVVQYMKIVEALPTYGVHYYAVKDKQGLPWWLGISYKGIG
QYDLQDKVKPRKLFQWKQLENLYFREKKFAVEVHDPRRISVSRRTFGQSGLFVQTWYANSSLIKSIWVMA
ISQHQFYLDRKQSKAKIPSARSLDDIAMDLTETGTQRGSKLVTLEAKSQFIMASNGSLISSGSQDSEGME
EQKREKILELKKKEKLLQEKLLQKVEELKKICLREAELTGRMPKEYPLNIGEKPPQVRRRVGTTFKLDDN
LLPTEEDPALQELESNFLIQQKLVEAAKKLASEPDLCKTVKKKRKQDYTDAVKRLQEIENSINEYRIRCG
KKPSQKAAVVPPEDIIPSESSSLSDTTTYDDPNDSFTLAGQRPSSVPHSPRILPPKSLGIERIHFRKSSI
NEQFMDTRHSREMLSTHSSPYKTLERRPQGGRSMPTTPVLTRNAYSSSHLEPDSSSQHCRQRSGSLESQS
HLLSEMDSDKPFFTLSKSQRSSSTEILDDGSSYTSQSSSEYYCVTPAASPYYTTQTLDTRARGRRRSKKH
SVSTSNSGSMPNLAQKDPLRNGVYSKGQDPPPSGYYIAGYPPYAECDLYYSGGYVYENDTEGQYSVNPSY
RSSAHYGYDRQRDYSRSFHEDEVDRVPHNPYATLRLPRKAAVKSEHITKNIHKALVAEHLRGWYQRASGQ
KDQGHSPQTSFDSDRGSQRCLGFAGLQVPCSPSSRASSYSSVSSTNASGNWRTQLTIGLSEYENPVHSPY
TSYYGSIYNPLSSPSRQYAETTPLDGTDGSQLEDNLEGSEQRLFWHEDSKPGTLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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