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Report for CCDS85342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85342.1 Public Mus musculus 7 Kctd14 23 108 98 CCDS HistoryNCBI Gene:233529Re-query CCDS DB by CCDS ID:85342.1Re-query CCDS DB by GeneID:233529See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 85342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050732.13 ENSMUSP00000060557.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050732.13Link to Ensembl Protein Viewer:ENSMUSP00000060557.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050732Re-query CCDS DB by Protein ID:ENSMUSP00000060557
Original member Current member EBI ENSMUST00000205577.1 ENSMUSP00000145727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205577.1Link to Ensembl Protein Viewer:ENSMUSP00000145727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205577Re-query CCDS DB by Protein ID:ENSMUSP00000145727
Original member Current member NCBI NM_001010826.3 NP_001010826.2 Accepted alive Link to Nucleotide Sequence:NM_001010826.3Link to Protein Sequence:NP_001010826.2Re-query CCDS DB by Nucleotide ID:NM_001010826Re-query CCDS DB by Protein ID:NP_001010826Link to BLAST:NP_001010826.2
Original member Current member NCBI NM_001012434.3 NP_001012436.1 Accepted alive Link to Nucleotide Sequence:NM_001012434.3Link to Protein Sequence:NP_001012436.1Re-query CCDS DB by Nucleotide ID:NM_001012434Re-query CCDS DB by Protein ID:NP_001012436Link to BLAST:NP_001012436.1

Chromosomal Locations for CCDS 85342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97454924 97454977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97457594 97458244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGAGTTCCTGGGCAAAGGTCATCTATGGAGCCAGCACTGAGCTAGACGCCAAGGTTGTGGAGCTGAATG
TAGGAGGGCAGTTCTACACTACTACCATGGGCACCCTGATGAAGCATCCAGGCTCAAAGTTTTCAGAGAT
ACTGTCCAGGTCAGCTAGACACTACAAAGACGCGCAGGGCCGCTTCTTCATCGATCGGCCTGGCACCTAC
TTTGGGCTTCTCTTGGACTACCTGCGCACTGGGCAGGTGCCCACAGAGTACGTTCCTGAGGTATACCAAG
AAGCTAAGTTCTACCAAATCCACCTTTTGGTCAAGATTTTGGAAGACATGCCACAGATCTTCGGTGAGCA
AGTGGCTCGAACGCAGTTCCTAATGGGAGTGCCAAACTACAGAGAAAACCTGGAGGTCCTGTTGCACCTG
GCTCGGGCAGAGGCTGTGGCGATGCGGTCGTCAAAGGTGGTGGTGTGTGTGGTGCGCACGGAGGAGGAGG
ATGCGAAGTGTGTGGAGCCGCTGCACATCTTGGAGGCCAAAAAGACACCGGTTGTCAAATTCGGGCCCTG
GAAGGCAGGCCCTATGACGGAGGACTTTGTATGCTGCCTGGAGAAGGACATTAGAGCCAAGGGGTATAAG
GTGACCTCTCAGAGGTACCACCTCAGCAGGGATCCCTACACTTGCTTCTGGATATTTGTCTTCACTTGGT
GGTGA

Translation (234 aa):
MSSWAKVIYGASTELDAKVVELNVGGQFYTTTMGTLMKHPGSKFSEILSRSARHYKDAQGRFFIDRPGTY
FGLLLDYLRTGQVPTEYVPEVYQEAKFYQIHLLVKILEDMPQIFGEQVARTQFLMGVPNYRENLEVLLHL
ARAEAVAMRSSKVVVCVVRTEEEDAKCVEPLHILEAKKTPVVKFGPWKAGPMTEDFVCCLEKDIRAKGYK
VTSQRYHLSRDPYTCFWIFVFTWW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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