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Report for CCDS85452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85452.1 Public Mus musculus 7 Paox 23 108 98 CCDS HistoryNCBI Gene:212503Re-query CCDS DB by CCDS ID:85452.1Re-query CCDS DB by GeneID:212503See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097967.3 ENSMUSP00000095580.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097967.3Link to Ensembl Protein Viewer:ENSMUSP00000095580.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097967Re-query CCDS DB by Protein ID:ENSMUSP00000095580
Original member NCBI NM_001346725.1 NP_001333654.1 Updated not alive Link to Nucleotide Sequence:NM_001346725.1Link to Protein Sequence:NP_001333654.1Re-query CCDS DB by Nucleotide ID:NM_001346725Re-query CCDS DB by Protein ID:NP_001333654
Current member NCBI NM_001346725.2 NP_001333654.1 Accepted alive Link to Nucleotide Sequence:NM_001346725.2Link to Protein Sequence:NP_001333654.1Re-query CCDS DB by Nucleotide ID:NM_001346725Re-query CCDS DB by Protein ID:NP_001333654Link to BLAST:NP_001333654.1

Chromosomal Locations for CCDS 85452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140125726 140125882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140129018 140129270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140131647 140131759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140132381 140132538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140134010 140134153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGGCGTTCCCTGGCCCGCGGGTGCTGGTGGTGGGCAGCGGCATCGCGGGGCTGGGCGCTGCGCAGAAGC
TCTGCAGCCACCGGGCTGCTCCACACCTGCGGGTTCTGGAGGCCACCGCCAGCGCCGGGGGCCGCATCCG
CTCGGAACGCTGCTTCGGTTTTCTTAAAGAACACCAAGATACCTTTTTTGAGCCACCACTGCCTGCCAAA
AAAGCAGAAGCCATCAAAAAACTAGGCTTTGGTACCAACAACAAAATCTTCTTGGAGTTTGAAGAGCCCT
TCTGGGAGCCCGACTGCCAGTTCATCCAGGTGGTGTGGGAAGATACATCGCCCTTACAGGACACAGCCCT
CTCACTCCAAGACACCTGGTTCAAGAAGCTCATTGGATTTTTGGTCCAGCCTTCTTTTGAGTCTTCACAT
GTGCTCTGTGGGTTTATTGCTGGGCTGGAGTCGGAGTTTATGGAGACTCTGTCAGATGAAGAAGTGCTTC
TGTCTCTAACCCAAGTACTCCGGAGAGTGACAGGAAACCCACAATTGCCAGCAGCCAAGAGCGTACGAAG
GTCTCAGTGGCACAGTGCCCCGTACACCCGAGGTTCCTACAGCTATGTGGCTGTGGGCAGCACTGGCGAT
GACCTAGATCTGATGGCTCAGCCCCTCCCTGAAGATGGAACTGGCACCCAGCTCCAGGTACTCTTTGCTG
GGGAAGCCACACATCGGACATTTTATTCTACCACACATGGGGCCCTCCTGTCTGGCTGGAGAGAAGCTGA
TCGCCTCGTTAGTCTGTGGGACTCACAGGTGGAGCAGTCGCGGCCCAGGCTGTGA

Translation (274 aa):
MAFPGPRVLVVGSGIAGLGAAQKLCSHRAAPHLRVLEATASAGGRIRSERCFGFLKEHQDTFFEPPLPAK
KAEAIKKLGFGTNNKIFLEFEEPFWEPDCQFIQVVWEDTSPLQDTALSLQDTWFKKLIGFLVQPSFESSH
VLCGFIAGLESEFMETLSDEEVLLSLTQVLRRVTGNPQLPAAKSVRRSQWHSAPYTRGSYSYVAVGSTGD
DLDLMAQPLPEDGTGTQLQVLFAGEATHRTFYSTTHGALLSGWREADRLVSLWDSQVEQSRPRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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