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Report for CCDS85570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85570.1 Public Mus musculus 8 Scoc 23 108 98 CCDS HistoryNCBI Gene:56367Re-query CCDS DB by CCDS ID:85570.1Re-query CCDS DB by GeneID:56367See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167525.2 ENSMUSP00000128210.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167525.2Link to Ensembl Protein Viewer:ENSMUSP00000128210.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167525Re-query CCDS DB by Protein ID:ENSMUSP00000128210
Original member Current member NCBI NM_001285992.1 NP_001272921.1 Accepted alive Link to Nucleotide Sequence:NM_001285992.1Link to Protein Sequence:NP_001272921.1Re-query CCDS DB by Nucleotide ID:NM_001285992Re-query CCDS DB by Protein ID:NP_001272921Link to BLAST:NP_001272921.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272921.1 81 Q78YZ6-3 81 100% 0 0

Chromosomal Locations for CCDS 85570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83435898 83436040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83437553 83437633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83437985 83438006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGATGAATGCTGACATGGACGTTGATGCTGAAAATCAGGTGGAACTGGAAGAAAAGACTCGACTTATTA
ATCAGGTGTTGGAACTCCAACACACACTTGAAGATCTTTCTGCAAGAGTAGATGCAGTTAAGGAAGAAAA
TCTGAAGCTAAAGTCGGAAAATCAAGTTCTCGGACAATATATAGAAAACCTCATGTCTGCTTCTAGTGTT
TTTCAAACAACTGATACAAAAAGCAAAAGGAAGTAA

Translation (81 aa):
MMNADMDVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSV
FQTTDTKSKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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