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Report for CCDS85646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85646.1 Public Mus musculus 9 Or7g22 23 108 98 CCDS HistoryNCBI Gene:258558Re-query CCDS DB by CCDS ID:85646.1Re-query CCDS DB by GeneID:258558See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212482.1 ENSMUSP00000148520.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212482.1Link to Ensembl Protein Viewer:ENSMUSP00000148520.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212482Re-query CCDS DB by Protein ID:ENSMUSP00000148520
Original member Current member EBI ENSMUST00000215699.1 ENSMUSP00000149907.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215699.1Link to Ensembl Protein Viewer:ENSMUSP00000149907.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215699Re-query CCDS DB by Protein ID:ENSMUSP00000149907
Original member Current member NCBI NM_146565.2 NP_666776.1 Accepted alive Link to Nucleotide Sequence:NM_146565.2Link to Protein Sequence:NP_666776.1Re-query CCDS DB by Nucleotide ID:NM_146565Re-query CCDS DB by Protein ID:NP_666776Link to BLAST:NP_666776.1

Chromosomal Locations for CCDS 85646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 19136995 19137933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAAGTTAAAAACAAGTCGGTTGTTTTGGATATTTTCCTTCATGGACTCACAGATGACATAGAGCTGC
AGCCCTTCATCTTTGGCTTCTTTTTATGCATGTATTTGATCACCATCTTTGGAAATCTTCTTATAATGTT
AGCCATCATTTGTGACTCCCACCTCCACAAACCCATGTACTTCTTTCTCTGCCATCTGGCTTTTAATGAC
ATGTATTTAATCAGCATTACAGTCCCAAAGTTGTTGGTGAATGTACAAACACAGGATCAGAGGATCACTT
TAGCTGGCTGTCTGAGCCAGGGATGCTTTGTGGCTGTATGTTTCATCTTTGAATGTTTTCTCCTTGGAAT
AATGGCCTATGACCGCTACATAGCCATTTGTTTTCCTCTAAGATACACAGTCCTCATCAATCCCTTCTTC
TGTGTTATTGTGGTTCTAATCTCTCTATTTATTAGTATTGTAAATGGTCTGCTGCATAGTCTGATGGTGC
TGCACTTGTCCTTCTGCACAGACCTGGAAATCCTCCACTTCTTCTGTGAAATTGCACAAATCCTCAAGCT
TGCCTGTTCTGACAACCTCATCAACAACATCCTGATATTTGTTACAGCTTCTAGTTTTGCTGGTGTTCCT
CTATGTGGAATAATCTTTTCTTATGTTCACATTGTTTCTACAGTATTGAAAATGCCATCATCAGAAGGAA
AGTATAAAGCCTTCTCTACTTGTGGGTCTCATTTATCAGTTGTTTCATTGTTTTATGGGACAGGTTTTGG
TGTATACATTACCTCAGTAGTAATTGATTCACCGAAGGAAATTGCTATTGCTTCAGTGATGTATTCCATA
GTTCCTCCAATGTTGAATCCCTTTGTTTATAGTTTGAAGAACAGGGATATGAAAGAAGCACTGAAGAAGG
TAATTGGTAGAACAGTTTCTCTTCCATGA

Translation (312 aa):
MEVKNKSVVLDIFLHGLTDDIELQPFIFGFFLCMYLITIFGNLLIMLAIICDSHLHKPMYFFLCHLAFND
MYLISITVPKLLVNVQTQDQRITLAGCLSQGCFVAVCFIFECFLLGIMAYDRYIAICFPLRYTVLINPFF
CVIVVLISLFISIVNGLLHSLMVLHLSFCTDLEILHFFCEIAQILKLACSDNLINNILIFVTASSFAGVP
LCGIIFSYVHIVSTVLKMPSSEGKYKAFSTCGSHLSVVSLFYGTGFGVYITSVVIDSPKEIAIASVMYSI
VPPMLNPFVYSLKNRDMKEALKKVIGRTVSLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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