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Report for CCDS8569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8569.1 Public Homo sapiens 12 LRRC23 24 110 108 CCDS HistoryNCBI Gene:10233Re-query CCDS DB by CCDS ID:8569.1Re-query CCDS DB by GeneID:10233See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000007969.12 ENSP00000007969.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000007969.12Link to Ensembl Protein Viewer:ENSP00000007969.8Re-query CCDS DB by Nucleotide ID:ENST00000007969Re-query CCDS DB by Protein ID:ENSP00000007969
Original member Current member EBI ENST00000443597.7 ENSP00000390932.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000443597.7Link to Ensembl Protein Viewer:ENSP00000390932.2Re-query CCDS DB by Nucleotide ID:ENST00000443597Re-query CCDS DB by Protein ID:ENSP00000390932
Original member Current member NCBI NM_001135217.2 NP_001128689.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135217.2Link to Protein Sequence:NP_001128689.1Re-query CCDS DB by Nucleotide ID:NM_001135217Re-query CCDS DB by Protein ID:NP_001128689Link to BLAST:NP_001128689.1
Original member Current member NCBI NM_201650.3 NP_964013.1 Accepted alive Link to Nucleotide Sequence:NM_201650.3Link to Protein Sequence:NP_964013.1Re-query CCDS DB by Nucleotide ID:NM_201650Re-query CCDS DB by Protein ID:NP_964013Link to BLAST:NP_964013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128689.1 343 Q53EV4-1 343 100% 0 0
NP_964013.1 343 Q53EV4-1 343 100% 0 0

Chromosomal Locations for CCDS 8569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6905634 6905759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6905845 6905954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6906409 6906662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6907315 6907445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6909890 6910026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6912730 6913003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGTCAGATGAAGATGATCTAGAAGACTCTGAGCCAGACCAGGATGATTCTGAGAAAGAAGAGGACGAGA
AG
GAGACAGAGGAGGGGGAGGACTACAGAAAAGAGGGGGAAGAGTTCCCTGAGGAATGGCTGCCCACCCC
C
CTCACGGAGGACATGATGAAGGAAGGGCTTTCTCTGCTCTGTAAGACAGGCAATGGGCTGGCTCATGCT
TAT
GTCAAGCTGGAGGTTAAAGAGAGGGACCTGACAGACATCTACTTGCTGCGCTCCTACATCCATCTGC
GC
TATGTGGATATTTCTGAGAACCACCTGACAGACCTGTCTCCACTCAACTACCTCACCCACCTGCTCTG
G
CTCAAGGCTGATGGCAATCGGCTGCGAAGTGCCCAGATGAATGAACTGCCCTACCTGCAGATTGCTAGT
TTT
GCTTATAACCAGATTACTGACACTGAAGGCATCTCTCATCCTCGTCTTGAAACCCTGAATCTCAAAG
GG
AACAGCATCCACATGGTGACAGGTCTGGACCCCGAGAAGTTGATCAGCCTGCACACAGTGGAGCTTCG
G
GGGAACCAGCTGGAAAGCACCCTGGGAATCAATCTTCCTAAGCTGAAGAACCTCTACCTGGCCCAAAAC
ATG
CTGAAGAAGGTGGAAGGCTTGGAGGATCTGAGCAATCTCACCACCTTGCATCTTCGAGACAACCAGA
TT
GACACCCTGAGTGGCTTCTCCAGAGAAATGAAATCATTGCAGTACCTCAACCTGAGGGGCAACATGGT
G
GCCAACCTGGGGGAGCTGGCCAAGCTTCGAGACCTGCCCAAGCTGCGAGCGTTGGTGCTGCTTGATAAC
CCA
TGCACGGACGAAACCAGCTACCGCCAGGAGGCCCTGGTGCAGATGCCATACCTTGAACGCCTGGACA
AG
GAATTCTATGAGGAGGAGGAACGGGCTGAGGCTGATGTGATTCGACAGAGGCTGAAGGAAGAAAAGGA
G
CAGGAGCCTGAGCCCCAGCGTGACCTGGAACCCGAACAGTCATTGATCTAG


Translation (343 aa):
MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLLCKTGNGLAHA
Y
VKLEVKE
RDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIAS
F
AYNQITDTEGISHPRLETLNLK
GNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQN
M
LKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNL
RGNMVANLGELAKLRDLPKLRALVLLDN
P
CTDETSYRQEALVQMPYLERLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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