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Report for CCDS86680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86680.1 Public Homo sapiens 18 TMX3 24 110 108 CCDS HistoryNCBI Gene:54495Re-query CCDS DB by CCDS ID:86680.1Re-query CCDS DB by GeneID:54495See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000562706.5 ENSP00000457262.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000562706.5Link to Ensembl Protein Viewer:ENSP00000457262.1Re-query CCDS DB by Nucleotide ID:ENST00000562706Re-query CCDS DB by Protein ID:ENSP00000457262
Original member Current member NCBI NM_001350512.2 NP_001337441.1 Accepted alive Link to Nucleotide Sequence:NM_001350512.2Link to Protein Sequence:NP_001337441.1Re-query CCDS DB by Nucleotide ID:NM_001350512Re-query CCDS DB by Protein ID:NP_001337441Link to BLAST:NP_001337441.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337441.1 195 Q96JJ7-2 195 100% 0 0

Chromosomal Locations for CCDS 86680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 68697208 68697303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68697932 68698031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68700405 68700485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68701745 68701790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68710021 68710144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68711364 68711403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68713846 68713900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 68714936 68714981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGCAGCGTGGAAGAGTTGGACGGCCCTGCGGCTCTGCGCCACAGTTGTTGTACTTGATATGGTCGTCT
GTAAAGGATTTGTAGAAGATTTAGATGAATCGTTTAAAGAAAATCGAAATGATGACATTTGGCTTGTAGA
TTTTTATGCGCCATGGTGTGGCCATTGTAAAAAGCTGGAACCAATTTGGAATGAAGTTGGTCTTGAGATG
AAAAGCATTGGTTCTCCAGTTAAGGTTGGAAAGATGGATGCTACTTCCTATTCTAGCATTGCTTCAGAGT
TTGGAGTTCGAGGTTATCCAACAATTAAGCTATTAAAAGGGGACTTGGCATATAATTATAGAGGACCACG
AACAAAAGATGATATTATTGAGTTTGCTCACAGAGTATCTGGGGCTCTAATTCGGCCACTTCCAAGTCAA
CAAATGTTTGAACATATGCAGAAGAGACACCGTGTATTTTTCGTTTATGTAGGTGGAGAATCACCTTTGA
AAGAGAAATACATAGATGCTGCTTCAGAATTGATTGTATATACATACTTCTTTTCTGCCTCAGAAGAAGT
GGTTCCTGAGGTAATATTTAAAATTTGA

Translation (195 aa):
MAAWKSWTALRLCATVVVLDMVVCKGFVEDLDESFKENRNDDIWLVDFYAPWCGHCKKLEPIWNEVGLEM
KSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIIEFAHRVSGALIRPLPSQ
QMFEHMQKRHRVFFVYVGGESPLKEKYIDAASELIVYTYFFSASEEVVPEVIFKI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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