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Report for CCDS86718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86718.1 Public Homo sapiens 19 PGLYRP2 24 110 108 CCDS HistoryNCBI Gene:114770Re-query CCDS DB by CCDS ID:86718.1Re-query CCDS DB by GeneID:114770See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86718.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292609.8 ENSP00000292609.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000292609.8Link to Ensembl Protein Viewer:ENSP00000292609.3Re-query CCDS DB by Nucleotide ID:ENST00000292609Re-query CCDS DB by Protein ID:ENSP00000292609
Original member Current member NCBI NM_001363546.1 NP_001350475.1 Accepted alive Link to Nucleotide Sequence:NM_001363546.1Link to Protein Sequence:NP_001350475.1Re-query CCDS DB by Nucleotide ID:NM_001363546Re-query CCDS DB by Protein ID:NP_001350475Link to BLAST:NP_001350475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350475.1 634 Q96PD5-2 634 100% 0 0

Chromosomal Locations for CCDS 86718.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 15469368 15469929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15471890 15472100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15475538 15476608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 15479311 15479371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGGCCCAGGGTGTCCTCTGGATCCTACTCGGATTGCTACTGTGGTCAGACCCAGGGACAGCCTCCCTGC
CCCTGCTCATGGACTCTGTCATCCAGGCCCTGGCTGAGCTGGAGCAGAAAGTGCCAGCTGCCAAGACCAG
ACACACAGCTTCTGCGTGGCTGATGTCAGCTCCAAACTCTGGCCCCCACAATCGCCTCTACCACTTCCTG
CTGGGGGCATGGAGCCTCAATGCTACAGAGTTGGATCCCTGCCCACTAAGCCCAGAGCTGTTAGGCCTGA
CCAAGGAGGTGGCCCGACATGACGTACGAGAAGGGAAGGAATATGGGGTGGTGCTGGCACCTGATGGCTC
GACCGTGGCTGTGGAGCCTCTGCTGGCGGGGCTGGAGGCAGGGCTGCAAGGGCGCAGGGTCATAAATTTG
CCCTTGGACAGCATGGCTGCCCCTTGGGAGACTGGAGATACCTTTCCAGATGTTGTGGCCATTGCTCCAG
ATGTAAGAGCCACCTCCTCCCCAGGACTCAGGGATGGCTCTCCAGATGTCACCACTGCAGATATTGGAGC
CAACACTCCAGATGCTACAAAAGGCTGTCCAGATGTCCAAGCTTCCTTGCCAGATGCCAAAGCCAAGTCC
CCACCGACCATGGTGGACAGCCTCCTGGCAGTCACCCTGGCTGGAAACCTGGGCCTGACCTTCCTCCGAG
GTTCCCAGACCCAGAGCCATCCAGACCTGGGAACTGAGGGCTGCTGGGACCAGCTCTCTGCCCCTCGGAC
CTTTACGCTTTTGGACCCCAAGGCATCTCTGTTAACCATGGCCTTCCTCAATGGCGCCCTGGATGGGGTC
ATCCTTGGAGACTACCTGAGCCGGACTCCTGAGCCCCGGCCATCCCTCAGCCACTTGCTGAGCCAGTACT
ATGGGGCTGGGGTGGCCAGAGACCCAGGGTTCCGCAGCAACTTCCGACGGCAGAACGGTGCTGCTCTGAC
TTCAGCCTCCATCCTGGCCCAGCAGGTGTGGGGAACCCTTGTCCTTCTACAGAGGCTGGAGCCAGTACAC
CTCCAGCTTCAGTGCATGAGCCAAGAACAGCTGGCCCAGGTGGCTGCCAATGCTACCAAGGAATTCACTG
AGGCCTTCCTGGGATGCCCGGCCATCCACCCCCGCTGCCGCTGGGGAGCGGCGCCTTATCGGGGCCGCCC
GAAGCTGCTGCAGCTGCCGCTGGGATTCTTGTACGTGCATCACACCTACGTGCCTGCACCACCCTGCACG
GACTTCACGCGCTGCGCAGCCAACATGCGCTCCATGCAGCGCTACCACCAGGACACGCAAGGCTGGGGAG
ACATCGGCTACAGTTTCGTGGTGGGCTCGGACGGCTACGTGTACGAGGGACGCGGCTGGCACTGGGTGGG
CGCCCACACGCTCGGCCACAACTCCCGGGGCTTCGGCGTGGCCATAGTGGGCAACTACACCGCGGCGCTG
CCCACCGAGGCCGCTCTGCGCACGGTGCGCGACACGCTCCCGAGTTGTGCGGTGCGCGCCGGCCTCCTGC
GGCCAGACTACGCGCTGCTGGGCCACCGCCAGCTGGTGCGCACCGACTGCCCCGGCGACGCGCTCTTCGA
CCTGCTGCGCACCTGGCCGCACTTCACCGCGGTGAGTCTTCGCAGCCTGCACTACACGGCCCGCCGCCCC
TCCGTCTACACAAGCTCCACGAGGCCCCTGCCCCCTGCCTGTAACAGCTGTGCCCGCACAGCCTCAGCCA
GGCCCCCAACTTCCCGGCGGCACGTCTATTCAGGAAACCTAGGCCCAGCCTTTGCGGGTCACTCTGCGGG
CAACATCCCTGATCCTGTGACTTCTGCCTATGCAGCCTCAGCTCAGCCCCAGACCCAGCCAGCCTGTCCT
TTCCCCAGCTCCTAA

Translation (634 aa):
MAQGVLWILLGLLLWSDPGTASLPLLMDSVIQALAELEQKVPAAKTRHTASAWLMSAPNSGPHNRLYHFL
LGAWSLNATELDPCPLSPELLGLTKEVARHDVREGKEYGVVLAPDGSTVAVEPLLAGLEAGLQGRRVINL
PLDSMAAPWETGDTFPDVVAIAPDVRATSSPGLRDGSPDVTTADIGANTPDATKGCPDVQASLPDAKAKS
PPTMVDSLLAVTLAGNLGLTFLRGSQTQSHPDLGTEGCWDQLSAPRTFTLLDPKASLLTMAFLNGALDGV
ILGDYLSRTPEPRPSLSHLLSQYYGAGVARDPGFRSNFRRQNGAALTSASILAQQVWGTLVLLQRLEPVH
LQLQCMSQEQLAQVAANATKEFTEAFLGCPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCT
DFTRCAANMRSMQRYHQDTQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAAL
PTEAALRTVRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLRTWPHFTAVSLRSLHYTARRP
SVYTSSTRPLPPACNSCARTASARPPTSRRHVYSGNLGPAFAGHSAGNIPDPVTSAYAASAQPQTQPACP
FPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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