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Report for CCDS87173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87173.1 Public Homo sapiens 3 ABCF3 24 110 108 CCDS HistoryNCBI Gene:55324Re-query CCDS DB by CCDS ID:87173.1Re-query CCDS DB by GeneID:55324See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292808.5 ENSP00000292808.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000292808.5Link to Ensembl Protein Viewer:ENSP00000292808.4Re-query CCDS DB by Nucleotide ID:ENST00000292808Re-query CCDS DB by Protein ID:ENSP00000292808
Original member Current member NCBI NM_001351298.2 NP_001338227.1 Accepted alive Link to Nucleotide Sequence:NM_001351298.2Link to Protein Sequence:NP_001338227.1Re-query CCDS DB by Nucleotide ID:NM_001351298Re-query CCDS DB by Protein ID:NP_001338227Link to BLAST:NP_001338227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338227.1 703 Q9NUQ8-2 703 100% 0 0

Chromosomal Locations for CCDS 87173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184186208 184186280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184186507 184186636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184186796 184186875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184187397 184187443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184187664 184187761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184187861 184187983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184188141 184188407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184188761 184188841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184188929 184188988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189088 184189144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189255 184189277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189388 184189443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189557 184189757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184189855 184189931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184190999 184191043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184191123 184191255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184192601 184192689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184192805 184192896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184193102 184193234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184193365 184193452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184193540 184193698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGGCGACTTGCGCCGAAATCCTGCGGAGCGAGTTCCCCGAAATTGACGGACAAGTCTTCGACTACGTGA
CCGGCGTCTTGCACAGCGGCAGCGCGGACTTCGAGTCTGTGGATGACCTGGTGGAAGCTGTAGGGGAACT
ATTGCAAGAGGTGTCCGGGGACAGCAAGGATGACGCGGGCATCAGGGCCGTGTGCCAGCGCATGGCTGAG
CCACAAAGCCAGGGAAATAGCCAGGTGCTACTGGACGCCCCTATCCAGTTGTCAAAGATAACGGAGAACT
ACGACTGTGGAACCAAACTTCCAGGACTGCTAAAGAGGGAACAGTCCTCGACAGTGAATGCAAAGAAGTT
AGAGAAGGCCGAGGCTCGACTTAAGGCAAAGCAGGAGAAGCGCTCAGAGAAGGACACGCTCAAGACCAGC
AACCCTCTAGTCTTAGAAGAGGCATCAGCCAGCCAGGCAGGCAGCAGAAAGGAGAGTCGGTTGGAATCAT
CTGGCAAGAACAAATCCTATGATGTGCGAATTGAGAACTTTGATGTGTCTTTTGGCGATAGAGTACTGCT
GGCTGGAGCGGATGTGAACCTGGCATGGGGCCGCCGTTACGGGCTGGTGGGGCGGAATGGGTTGGGGAAG
ACAACGTTACTGAAGATGCTGGCCACCCGGAGTCTGCGGGTTCCAGCCCACATTTCCCTGCTGCACGTTG
AGCAAGAGGTTGCTGGAGATGACACTCCTGCCCTGCAGAGTGTGCTGGAGAGTGACAGTGTGCGAGAGGA
TTTGCTACGGAGGGAGCGGGAGCTCACTGCCCAGATTGCTGCTGGCAGGGCGGAGGGCTCTGAAGCTGCA
GAGCTGGCAGAAATCTATGCCAAACTGGAGGAGATTGAGGCTGACAAGGCACCTGCCAGGGCATCAGTCA
TTCTCGCTGGGCTTGGCTTTACCCCTAAAATGCAGCAGCAGCCCACCCGGGAGTTCTCAGGTGGCTGGAG
GATGAGGCTGGCCCTGGCCCGGGCCCTCTTTGCTAGGCCAGATCTTCTGCTGTTAGATGAACCTACAAAC
ATGCTGGATGTCAGGGCCATCCTGTGGCTGGAGAATTACCTGCAGACGTGGCCCTCCACCATCCTAGTCG
TCTCCCACGACCGCAACTTCTTGAATGCCATCGCCACAGACATCATCCACCTGCACAGCCAGCGGCTAGA
TGGTTACCGGGGAGACTTTGAGACCTTCATCAAGAGTAAGCAGGAGCGGCTGCTCAACCAGCAGCGTGAA
TATGAGGCGCAGCAGCAGTATCGCCAGCACATCCAGGTTTTCATTGACCGGTTTCGCTACAATGCCAACA
GGGCCTCTCAAGTGCAGAGTAAACTCAAGATGCTGGAGAAGCTGCCTGAGCTGAAGCCTGTGGACAAGGA
ATCAGAGGTCGTAATGAAGTTCCCTGATGGGTTTGAGAAGTTCTCGCCGCCAATTCTGCAGCTAGATGAG
GTGGATTTCTACTACGATCCGAAGCACGTCATCTTCAGTCGCCTCTCTGTGTCTGCTGATCTCGAGTCTC
GCATCTGTGTGGTTGGAGAGAATGGGGCTGGGAAGTCTACCATGCTGAAGCTGCTTTTGGGGGACCTGGC
ACCTGTTCGGGGCATCAGACACGCTCACAGGAATCTGAAGATTGGCTATTTCAGCCAGCACCATGTGGAG
CAGCTGGACCTAAACGTCAGTGCTGTGGAACTGCTGGCACGCAAGTTTCCTGGGCGGCCTGAGGAGGAGT
ACCGTCACCAGCTGGGTCGGTATGGCATCTCCGGAGAACTGGCCATGCGTCCTCTTGCCAGCCTGTCTGG
GGGCCAGAAGAGCCGAGTGGCCTTTGCTCAGATGACTATGCCCTGCCCCAACTTCTACATTCTGGATGAA
CCCACAAACCACCTGGACATGGAGACCATTGAGGCTCTGGGCCGTGCCCTCAACAATTTCAGGGGTGGTG
TGATTCTGGTGTCCCACGATGAGCGCTTTATCAGGCTGGTGTGCCGGGAGTTGTGGGTATGCGAAGGAGG
CGGCGTCACCCGTGTGGAAGGAGGATTTGACCAGTACCGCGCCCTCCTCCAGGAACAGTTCCGCCGCGAA
GGCTTCCTCTAG

Translation (703 aa):
MATCAEILRSEFPEIDGQVFDYVTGVLHSGSADFESVDDLVEAVGELLQEVSGDSKDDAGIRAVCQRMAE
PQSQGNSQVLLDAPIQLSKITENYDCGTKLPGLLKREQSSTVNAKKLEKAEARLKAKQEKRSEKDTLKTS
NPLVLEEASASQAGSRKESRLESSGKNKSYDVRIENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGK
TTLLKMLATRSLRVPAHISLLHVEQEVAGDDTPALQSVLESDSVREDLLRRERELTAQIAAGRAEGSEAA
ELAEIYAKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARALFARPDLLLLDEPTN
MLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLLNQQRE
YEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVMKFPDGFEKFSPPILQLDE
VDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLKIGYFSQHHVE
QLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDE
PTNHLDMETIEALGRALNNFRGGVILVSHDERFIRLVCRELWVCEGGGVTRVEGGFDQYRALLQEQFRRE
GFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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