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Report for CCDS8727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8727.1 Public Homo sapiens 12 FGD4 24 110 108 CCDS HistoryNCBI Gene:121512Re-query CCDS DB by CCDS ID:8727.1Re-query CCDS DB by GeneID:121512See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 8727.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427716.7 ENSP00000394487.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427716.7Link to Ensembl Protein Viewer:ENSP00000394487.2Re-query CCDS DB by Nucleotide ID:ENST00000427716Re-query CCDS DB by Protein ID:ENSP00000394487
Original member Current member EBI ENST00000525053.6 ENSP00000433666.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525053.6Link to Ensembl Protein Viewer:ENSP00000433666.2Re-query CCDS DB by Nucleotide ID:ENST00000525053Re-query CCDS DB by Protein ID:ENSP00000433666
Original member Current member EBI ENST00000583694.2 ENSP00000462623.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583694.2Link to Ensembl Protein Viewer:ENSP00000462623.2Re-query CCDS DB by Nucleotide ID:ENST00000583694Re-query CCDS DB by Protein ID:ENSP00000462623
Original member Current member NCBI NM_001385118.1 NP_001372047.1 Accepted alive Link to Nucleotide Sequence:NM_001385118.1Link to Protein Sequence:NP_001372047.1Re-query CCDS DB by Nucleotide ID:NM_001385118Re-query CCDS DB by Protein ID:NP_001372047Link to BLAST:NP_001372047.1
Original member Current member NCBI NM_139241.3 NP_640334.2 Accepted alive Link to Nucleotide Sequence:NM_139241.3Link to Protein Sequence:NP_640334.2Re-query CCDS DB by Nucleotide ID:NM_139241Re-query CCDS DB by Protein ID:NP_640334Link to BLAST:NP_640334.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372047.1 766 Q96M96-1 766 100% 0 0
NP_640334.2 766 Q96M96-1 766 100% 0 0

Chromosomal Locations for CCDS 8727.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 32576358 32576449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32581960 32582467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32598497 32598586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32601278 32601423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32602161 32602317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32607957 32608095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32610776 32610834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32611137 32611283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32619698 32619870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32624422 32624452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32624976 32625068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32625654 32625779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32633549 32633689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32638655 32638795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 32640276 32640533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2301 nt):
ATGGAGGAAATTAAACCTGCCTCTGCTTCTTGTGTCTCAAAAGAAAAACCCAGTAAGGTATCAGATCTCA
TCAGTCGCTTTGAAGGAGGCAGCTCATTATCAAATTATAGTGATTTGAAGAAAGAGTCTGCTGTGAACCT
AAATGCTCCTAGAACCCCAGGAAGGCATGGATTGACAACCACACCTCAACAAAAACTCCTCTCCCAGCAC
TTGCCACAGAGGCAGGGAAATGATACAGATAAGACTCAGGGTGCACAGACTTGTGTGGCCAACGGTGTAA
TGGCAGCACAAAACCAGATGGAATGTGAGGAGGAGAAAGCTGCCACTCTTAGCTCAGATACTTCTATTCA
AGCTTCTGAACCCTTGCTTGATACGCACATAGTGAATGGAGAAAGAGATGAAACTGCCACAGCTCCTGCA
TCACCCACAACAGACAGCTGTGATGGAAATGCTTCTGACAGTAGCTACAGGACTCCAGGCATAGGCCCAG
TGCTCCCCCTAGAAGAAAGAGGGGCAGAAACAGAAACCAAGGTACAAGAGAGGGAAAATGGGGAAAGCCC
TCTGGAACTGGAGCAGCTGGACCAGCACCATGAGATGAAGGAGACTAATGAGCAAAAACTTCACAAAATA
GCCAATGAACTTTTGCTTACTGAAAGAGCTTATGTCAACCGACTTGACCTCTTAGATCAGGTATTTTATT
GCAAACTGTTGGAAGAAGCAAACCGAGGCTCGTTTCCAGCAGAGATGGTGAATAAAATCTTTTCTAATAT
TTCATCAATAAATGCCTTCCATAGTAAATTCCTCTTGCCAGAGCTGGAGAAACGAATGCAAGAATGGGAA
ACTACTCCTAGAATTGGAGACATCCTTCAGAAATTGGCACCATTCCTTAAGATGTATGGAGAATATGTGA
AAGGATTTGATAATGCAATGGAATTGGTTAAAAACATGACAGAACGTATTCCCCAGTTCAAATCAGTGGT
TGAAGAAATTCAGAAACAGAAAATCTGTGGGAGCTTAACTTTGCAGCATCACATGCTAGAACCTGTTCAG
CGGATTCCCCGGTATGAGATGCTCCTTAAGGACTATCTAAGGAAATTGCCTCCTGATTCCCTGGACTGGA
ATGATGCTAAAAAATCACTTGAAATTATATCTACAGCAGCAAGCCATTCTAATAGTGCAATAAGGAAAAT
GGAGAACCTAAAGAAACTCTTAGAGATTTATGAAATGTTGGGAGAAGAAGAAGACATTGTAAACCCTTCA
AATGAACTAATAAAAGAAGGACAGATCCTCAAACTAGCTGCTCGGAACACTTCAGCACAAGAACGCTACC
TTTTCTTATTCAACAACATGTTGCTGTACTGTGTGCCCAAATTCAGCTTGGTAGGCTCTAAATTCACAGT
TCGAACCAGGGTTGGCATTGATGGAATGAAAATTGTAGAGACTCAAAATGAAGAATATCCACATACTTTC
CAGGTGTCTGGGAAAGAGAGAACACTGGAACTGCAGGCCAGTTCTGCGCAAGACAAAGAAGAATGGATCA
AGGCCCTTCAAGAAACCATCGATGCTTTTCATCAAAGGCATGAAACCTTCAGAAATGCAATTGCAAAGGA
TAATGACATTCACTCAGAGGTTTCTACTGCTGAGCTAGGGAAAAGAGCCCCAAGATGGATCCGAGATAAT
GAAGTGACAATGTGTATGAAATGTAAAGAACCTTTCAATGCACTGACACGAAGGAGGCATCATTGTCGAG
CATGTGGATATGTGGTTTGTTGGAAATGCTCCGACTACAAAGCTCAACTTGAATATGATGGTGGTAAATT
GAGCAAAGTTTGTAAAGACTGTTATCAAATCATAAGTGGATTCACAGACAGTGAAGAAAAGAAAAGAAAA
GGAATTTTAGAGATTGAATCAGCAGAAGTATCTGGAAACAGTGTGGTGTGCAGCTTTCTTCAGTATATGG
AGAAGTCAAAACCTTGGCAGAAAGCTTGGTGTGTGATCCCCAAGCAAGACCCTCTTGTGCTGTACATGTA
TGGTGCCCCCCAGGACGTCAGAGCCCAGGCCACCATTCCACTTCTGGGCTATGTGGTGGATGAAATGCCA
AGGAGCGCAGACCTGCCACACAGTTTCAAACTGACCCAGTCTAAGTCCGTGCACAGCTTTGCTGCAGACA
GTGAGGAACTGAAGCAGAAGTGGCTGAAAGTCATCCTTTTAGCTGTCACAGGTGAGACACCAGGTGGTCC
AAATGAGCATCCAGCCACCTTGGATGATCATCCTGAACCTAAGAAAAAATCAGAATGCTGA

Translation (766 aa):
MEEIKPASASCVSKEKPSKVSDLISRFEGGSSLSNYSDLKKESAVNLNAPRTPGRHGLTTTPQQKLLSQH
LPQRQGNDTDKTQGAQTCVANGVMAAQNQMECEEEKAATLSSDTSIQASEPLLDTHIVNGERDETATAPA
SPTTDSCDGNASDSSYRTPGIGPVLPLEERGAETETKVQERENGESPLELEQLDQHHEMKETNEQKLHKI
ANELLLTERAYVNRLDLLDQVFYCKLLEEANRGSFPAEMVNKIFSNISSINAFHSKFLLPELEKRMQEWE
TTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGSLTLQHHMLEPVQ
RIPRYEMLLKDYLRKLPPDSLDWNDAKKSLEIISTAASHSNSAIRKMENLKKLLEIYEMLGEEEDIVNPS
NELIKEGQILKLAARNTSAQERYLFLFNNMLLYCVPKFSLVGSKFTVRTRVGIDGMKIVETQNEEYPHTF
QVSGKERTLELQASSAQDKEEWIKALQETIDAFHQRHETFRNAIAKDNDIHSEVSTAELGKRAPRWIRDN
EVTMCMKCKEPFNALTRRRHHCRACGYVVCWKCSDYKAQLEYDGGKLSKVCKDCYQIISGFTDSEEKKRK
GILEIESAEVSGNSVVCSFLQYMEKSKPWQKAWCVIPKQDPLVLYMYGAPQDVRAQATIPLLGYVVDEMP
RSADLPHSFKLTQSKSVHSFAADSEELKQKWLKVILLAVTGETPGGPNEHPATLDDHPEPKKKSEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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