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Report for CCDS87350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87350.1 Public Homo sapiens 5 CLTB 24 110 108 CCDS HistoryNCBI Gene:1212Re-query CCDS DB by CCDS ID:87350.1Re-query CCDS DB by GeneID:1212See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87350.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000510734.5 ENSP00000422978.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510734.5Link to Ensembl Protein Viewer:ENSP00000422978.1Re-query CCDS DB by Nucleotide ID:ENST00000510734Re-query CCDS DB by Protein ID:ENSP00000422978
Original member Current member NCBI NM_001364127.2 NP_001351056.1 Accepted alive Link to Nucleotide Sequence:NM_001364127.2Link to Protein Sequence:NP_001351056.1Re-query CCDS DB by Nucleotide ID:NM_001364127Re-query CCDS DB by Protein ID:NP_001351056Link to BLAST:NP_001351056.1

Chromosomal Locations for CCDS 87350.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176406538 176406708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176410257 176410303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176416177 176416363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGCTGATGACTTTGGCTTCTTCTCGTCGTCGGAGAGCGGTGCCCCGGAGGCGGCGGAGGAGGACCCGG
CGGCCGCCTTCCTGGCCCAGCAGGAGAGCGAGATTGCAGGCATAGAGAACGACGAGGGCTTCGGGGCACC
TGCCGGCAGCCATGCGGCCCCCGCGCAGCCGGGCCCCACGAGTGGGGCTGGTTCTGAGGACATGGGGACC
ACAGTCAATGGAGATGTGTTTCAGCCCGTGCACCACCAGCGGGTCCAGCTACAAACCCAGTTGCCAATAC
AGCCTAAGGACGAGCCTGCCCACAACTATTCCAGTTCCATTTGGCACAGCCAGGGGCAGGGACAGAAGGG
CCCTGCAGGACTCCGCCTCCCCACCTCTGCACAGATCCTCTCTCCTTTCCCCTAA

Translation (134 aa):
MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSGAGSEDMGT
TVNGDVFQPVHHQRVQLQTQLPIQPKDEPAHNYSSSIWHSQGQGQKGPAGLRLPTSAQILSPFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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