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Report for CCDS87433.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87433.1 Public Homo sapiens 6 DSE 24 110 108 CCDS HistoryNCBI Gene:29940Re-query CCDS DB by CCDS ID:87433.1Re-query CCDS DB by GeneID:29940See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87433.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647244.1 ENSP00000495184.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647244.1Link to Ensembl Protein Viewer:ENSP00000495184.1Re-query CCDS DB by Nucleotide ID:ENST00000647244Re-query CCDS DB by Protein ID:ENSP00000495184
Original member Current member EBI ENST00000646710.1 ENSP00000495970.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000646710.1Link to Ensembl Protein Viewer:ENSP00000495970.1Re-query CCDS DB by Nucleotide ID:ENST00000646710Re-query CCDS DB by Protein ID:ENSP00000495970
Original member Current member NCBI NM_001322943.2 NP_001309872.1 Accepted alive Link to Nucleotide Sequence:NM_001322943.2Link to Protein Sequence:NP_001309872.1Re-query CCDS DB by Nucleotide ID:NM_001322943Re-query CCDS DB by Protein ID:NP_001309872Link to BLAST:NP_001309872.1

Chromosomal Locations for CCDS 87433.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116399251 116399666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116426574 116426827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116435587 116435603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGAGGACTCACACACGGGGGGCTCCCAGTGTGTTTTTCATATATTTGCTTTGCTTTGTGTCAGCCTACA
TCACCGACGAGAACCCAGAAGTTATGATTCCCTTCACCAATGCCAACTACGACAGCCATCCCATGCTGTA
CTTCTCCAGGGCAGAAGTGGCGGAGCTGCAGCTCAGGGCTGCCAGCTCGCACGAGCACATTGCAGCCCGC
CTCACGGAGGCTGTGCACACGATGCTGTCCAGCCCCTTGGAATACCTCCCTCCCTGGGATCCCAAGGACT
ACAGTGCCCGCTGGAATGAAATTTTTGGAAACAACTTGGGTGCCTTGGCAATGTTCTGTGTGCTGTATCC
TGAGAACATTGAAGCCCGAGACATGGCCAAAGACTACATGGAGAGGATGGCAGCGCAGCCTAGTTGGTTG
GTGAAAGATGCTCCTTGGGATGAGGTCCCGCTTGCTCACTCCCTGGTTGGTTTTGCCACTGCTTATGACT
TCTTGTACAACTACCTGAGCAAGACACAACAGGAGAAGTTTCTTGAAGTGATTGCCAATGCCTCAGGGTA
TATGTATGAAACTTCATACAGGAGAGGATGGGGATTTCAATACCTGCACAATCATCAGCCCACCAACTGT
ATGGCTTTGCTCACGGGAAGCCTAGTCCTGATGAATCAAGGTATGATGGCAGCTTGA

Translation (228 aa):
MRTHTRGAPSVFFIYLLCFVSAYITDENPEVMIPFTNANYDSHPMLYFSRAEVAELQLRAASSHEHIAAR
LTEAVHTMLSSPLEYLPPWDPKDYSARWNEIFGNNLGALAMFCVLYPENIEARDMAKDYMERMAAQPSWL
VKDAPWDEVPLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYETSYRRGWGFQYLHNHQPTNC
MALLTGSLVLMNQGMMAA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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