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Report for CCDS87462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87462.1 Public Homo sapiens 6 SYNJ2 24 110 108 CCDS HistoryNCBI Gene:8871Re-query CCDS DB by CCDS ID:87462.1Re-query CCDS DB by GeneID:8871See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87462.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000638626.1 ENSP00000492369.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638626.1Link to Ensembl Protein Viewer:ENSP00000492369.1Re-query CCDS DB by Nucleotide ID:ENST00000638626Re-query CCDS DB by Protein ID:ENSP00000492369
Original member Current member NCBI NM_001178088.2 NP_001171559.1 Accepted alive Link to Nucleotide Sequence:NM_001178088.2Link to Protein Sequence:NP_001171559.1Re-query CCDS DB by Nucleotide ID:NM_001178088Re-query CCDS DB by Protein ID:NP_001171559Link to BLAST:NP_001171559.1

Chromosomal Locations for CCDS 87462.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 158043316 158043399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158054967 158055028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158059257 158059353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158061992 158062164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158063791 158063872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158064601 158064750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158064826 158064991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158066444 158066635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158068647 158068728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158069533 158069673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158071602 158071794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158074580 158074738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158076626 158076782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158078164 158078281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158081109 158081327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158081432 158081510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158083429 158083597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158084001 158084174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158086855 158086989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158088660 158088772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158089839 158089947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158092926 158093104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158095618 158096364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3780 nt):
ATGATTTACATGGACGATGGAGTGTCATCTTTTGTCCAGATCAGAGGCTCCGTTCCGCTGTTCTGGGAAC
AGCCAGGGCTTCAGGTTGGCTCCCATCATCTGAGACTCCACAGAGGCCTGGAAGCCAATGCCCCTGCTTT
CGACAGGCACATGGTGCTTCTGAAGGAGCAGTACGGGCAGCAGGTGGTCGTGAACCTTCTGGGAAGCAGA
GGCGGAGAGGAGGTGCTCAACAGAGCCTTCAAGAAGCTGCTCTGGGCTTCTTGCCACGCGGGCGACACGC
CTATGATCAATTTTGACTTCCATCAGTTTGCCAAAGGTGGGAAGCTAGAGAAATTGGAGACCCTCTTGAG
GCCACAGTTAAAGCTGCACTGGGAAGACTTCGATGTGTTCACAAAGGGGGAGAACGTCAGTCCACGTTTT
CAGAAAGGCACTTTGCGGATGAACTGTCTTGACTGCCTGGACCGAACCAACACTGTGCAGAGCTTCATCG
CGCTCGAGGTCCTGCATCTGCAGCTCAAGACCCTGGGGCTGAGTTCAAAACCCATCGTTGACCGCTTTGT
GGAGTCCTTCAAAGCCATGTGGTCTCTGAATGGCCACAGCCTGAGCAAGGTGTTCACAGGCAGCAGAGCC
CTGGAAGGGAAGGCCAAGGTGGGGAAGCTGAAGGATGGAGCCCGGTCCATGTCTCGAACCATCCAGTCCA
ACTTCTTCGACGGGGTGAAGCAGGAGGCCATCAAGCTGCTGCTGGTTGGGGACGTCTACGGCGAGGAGGT
GGCAGACAAAGGGGGCATGCTGCTGGACAGCACGGCGCTCCTGGTGACTCCCAGGATCCTGAAAGCTATG
ACTGAGCGTCAGTCCGAATTCACAAATTTCAAGCGGATCCGGATTGCTATGGGGACCTGGAACGTGAACG
GAGGAAAGCAGTTCCGGAGCAACGTGCTCAGGACGGCGGAGCTGACAGACTGGCTGCTCGACTCGCCCCA
GCTCTCGGGAGCTACCGACTCCCAGGATGACAGCAGCCCAGCTGACATATTTGCTGTGGGGTTTGAAGAG
ATGGTGGAATTGAGCGCAGGGAATATTGTCAATGCCAGTACTACCAACAAGAAGATGTGGGGTGAACAGC
TTCAGAAAGCCATCTCACGCTCTCATAGATACATTCTGTTGACTTCGGCACAGCTGGTGGGCGTCTGTCT
TTATATCTTTGTACGTCCATACCATGTCCCGTTCATCAGGGACGTAGCCATCGACACAGTGAAGACGGGC
ATGGGGGGCAAGGCGGGGAACAAGGGCGCCGTCGGCATCCGCTTCCAGTTCCACAGCACCAGCTTCTGCT
TCATATGTAGTCACCTGACGGCCGGGCAGTCCCAGGTGAAGGAGCGGAATGAAGACTACAAGGAGATCAC
CCAGAAACTCTGCTTCCCAATGGGGAGAAATGTTTTTTCTCATGATTATGTATTTTGGTGTGGCGATTTC
AACTACCGCATTGATCTTACTTATGAAGAAGTCTTCTATTTTGTTAAACGCCAAGACTGGAAGAAACTTC
TGGAATTTGATCAACTACAGCTACAGAAATCAAGTGGAAAAATTTTTAAGGACTTTCACGAAGGAGCCAT
TAACTTTGGACCCACCTACAAGTATGACGTTGGCTCAGCCGCCTACGATACAAGCGACAAATGCCGCACC
CCCGCCTGGACAGACAGGGTGCTGTGGTGGAGGAAGAAACATCCCTTTGATAAAACAGCTGGAGAACTCA
ACCTTCTAGACAGTGATCTAGATGTTGACACCAAAGTCAGACACACCTGGTCTCCTGGTGCCCTGCAGTA
TTATGGTCGTGCGGAGCTACAAGCGTCTGATCACAGACCTGTGCTGGCGATCGTGGAGGTGGAAGTTCAG
GAAGTCGATGTGGGTGCTCGGGAGAGGGTTTTCCAGGAAGTGTCCTCCTTCCAGGGCCCCCTGGATGCCA
CTGTTGTAGTAAACCTTCAATCACCGACCTTAGAAGAGAAAAACGAGTTTCCAGAGGACCTGCGTACTGA
GCTCATGCAGACCTTGGGGAGTTATGGGACAATTGTTCTTGTCAGGATCAACCAAGGGCAGATGCTGGTA
ACTTTTGCAGACAGTCACTCGGCTCTCAGTGTCCTGGACGTGGACGGTATGAAGGTGAAAGGCAGAGCAG
TGAAGATTAGACCGAAGACCAAGGACTGGCTGAAAGGTTTGCGAGAGGAGATCATTCGGAAACGAGACAG
CATGGCCCCCGTGTCTCCCACTGCCAACTCCTGTTTGCTGGAGGAAAACTTTGACTTCACAAGTTTGGAC
TATGAGTCAGAAGGGGATATTCTTGAAGACGATGAAGACTACTTGGTGGATGAATTCAATCAGCCTGGAG
TCTCGGACAGTGAACTCGGGGGAGACGACCTCTCTGATGTCCCCGGCCCCACAGCACTGGCTCCTCCCAG
CAAGTCACCTGCTCTCACCAAAAAGAAGCAGCATCCAACGTACAAAGATGACGCGGACCTGGTGGAGCTC
AAGCGGGAGCTGGAAGCCGTCGGGGAGTTCCGCCACCGTTCTCCGAGCAGGTCTCTGTCGGTCCCCAACC
GGCCTCGGCCACCTCAACCCCCGCAGAGACCCCCCCCTCCAACCGGTTTAATGGTGAAAAAGTCGGCTTC
AGATGCGTCCATCTCCTCCGGCACCCATGGACAGTATTCAATTTTGCAGACGGCAAGACTTCTACCAGGA
GCACCTCAGCAACCTCCCAAGGCTCGGACTGGAATAAGTAAACCTTATAATGTCAAGCAGATCAAAACCA
CCAATGCCCAGGAGGCAGAAGCAGCAATCCGGTGTCTCCTGGAAGCCAGAGGAGGTGCCTCCGAAGAAGC
CCTAAGTGCCGTGGCCCCAAGGGACCTTGAAGCATCCTCTGAACCAGAGCCCACACCGGGGGCAGCCAAA
CCAGAGACCCCACAGGCGCCCCCACTCCTTCCCCGTCGGCCCCCACCCAGAGTTCCTGCCATCAAGAAGC
CAACCTTGAGAAGGACAGGAAAGCCCCTGTCACCGGAAGAACAGTTTGAGCAACAGACTGTCCATTTTAC
AATCGGGCCCCCGGAGACAAGCGTTGAGGCCCCTCCTGTCGTGACAGCCCCTCGAGTCCCTCCTGTTCCC
AAACCAAGAACATTTCAGCCTGGGAAAGCTGCAGAGAGGCCAAGCCACAGGAAGCCAGCATCAGACGAAG
CCCCTCCTGGGGCAGGAGCCTCTGTGCCACCACCTCTGGAGGCGCCGCCTCTTGTGCCCAAGGTACCCCC
GAGGAGGAAGAAGTCAGCCCCCGCAGCCTTCCACCTGCAGGTCCTGCAGAGCAACAGCCAGCTTCTCCAG
GGCCTCACTTACAATAGCAGTGACAGCCCCTCTGGGCACCCACCTGCCGCGGGCACCGTCTTCCCACAAG
GGGACTTTCTCAGCACTTCATCTGCTACAAGCCCCGACAGCGATGGCACCAAAGCGATGAAGCCAGAGGC
AGCCCCACTTCTTGGTGATTATCAGGACCCCTTCTGGAACCTTCTTCACCACCCTAAACTGTTGAATAAC
ACTTGGCTTTCTAAGAGCTCAGACCCTTTGGACTCAGGAACCAGGAGCCCCAAAAGAGATCCCATAGACC
CAGTGTCAGCTGGCGCTTCAGCTGCCAAGGCAGAGCTGCCACCAGATCATGAACACAAAACCTTAGGTCA
CTGGGTGACAATCAGTGACCAAGAAAAGAGGACAGCACTGCAGGTGTTTGACCCACTGGCAAAAACATGA

Translation (1259 aa):
MIYMDDGVSSFVQIRGSVPLFWEQPGLQVGSHHLRLHRGLEANAPAFDRHMVLLKEQYGQQVVVNLLGSR
GGEEVLNRAFKKLLWASCHAGDTPMINFDFHQFAKGGKLEKLETLLRPQLKLHWEDFDVFTKGENVSPRF
QKGTLRMNCLDCLDRTNTVQSFIALEVLHLQLKTLGLSSKPIVDRFVESFKAMWSLNGHSLSKVFTGSRA
LEGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVYGEEVADKGGMLLDSTALLVTPRILKAM
TERQSEFTNFKRIRIAMGTWNVNGGKQFRSNVLRTAELTDWLLDSPQLSGATDSQDDSSPADIFAVGFEE
MVELSAGNIVNASTTNKKMWGEQLQKAISRSHRYILLTSAQLVGVCLYIFVRPYHVPFIRDVAIDTVKTG
MGGKAGNKGAVGIRFQFHSTSFCFICSHLTAGQSQVKERNEDYKEITQKLCFPMGRNVFSHDYVFWCGDF
NYRIDLTYEEVFYFVKRQDWKKLLEFDQLQLQKSSGKIFKDFHEGAINFGPTYKYDVGSAAYDTSDKCRT
PAWTDRVLWWRKKHPFDKTAGELNLLDSDLDVDTKVRHTWSPGALQYYGRAELQASDHRPVLAIVEVEVQ
EVDVGARERVFQEVSSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLV
TFADSHSALSVLDVDGMKVKGRAVKIRPKTKDWLKGLREEIIRKRDSMAPVSPTANSCLLEENFDFTSLD
YESEGDILEDDEDYLVDEFNQPGVSDSELGGDDLSDVPGPTALAPPSKSPALTKKKQHPTYKDDADLVEL
KRELEAVGEFRHRSPSRSLSVPNRPRPPQPPQRPPPPTGLMVKKSASDASISSGTHGQYSILQTARLLPG
APQQPPKARTGISKPYNVKQIKTTNAQEAEAAIRCLLEARGGASEEALSAVAPRDLEASSEPEPTPGAAK
PETPQAPPLLPRRPPPRVPAIKKPTLRRTGKPLSPEEQFEQQTVHFTIGPPETSVEAPPVVTAPRVPPVP
KPRTFQPGKAAERPSHRKPASDEAPPGAGASVPPPLEAPPLVPKVPPRRKKSAPAAFHLQVLQSNSQLLQ
GLTYNSSDSPSGHPPAAGTVFPQGDFLSTSSATSPDSDGTKAMKPEAAPLLGDYQDPFWNLLHHPKLLNN
TWLSKSSDPLDSGTRSPKRDPIDPVSAGASAAKAELPPDHEHKTLGHWVTISDQEKRTALQVFDPLAKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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