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Report for CCDS87898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87898.1 Public Mus musculus 1 Cryzl2 23 108 98 CCDS HistoryNCBI Gene:226527Re-query CCDS DB by CCDS ID:87898.1Re-query CCDS DB by GeneID:226527See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193791.5 ENSMUSP00000141717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193791.5Link to Ensembl Protein Viewer:ENSMUSP00000141717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193791Re-query CCDS DB by Protein ID:ENSMUSP00000141717
Original member NCBI NM_001356418.1 NP_001343347.1 Updated not alive Link to Nucleotide Sequence:NM_001356418.1Link to Protein Sequence:NP_001343347.1Re-query CCDS DB by Nucleotide ID:NM_001356418Re-query CCDS DB by Protein ID:NP_001343347
Current member NCBI NM_001356418.2 NP_001343347.1 Accepted alive Link to Nucleotide Sequence:NM_001356418.2Link to Protein Sequence:NP_001343347.1Re-query CCDS DB by Nucleotide ID:NM_001356418Re-query CCDS DB by Protein ID:NP_001343347Link to BLAST:NP_001343347.1

Chromosomal Locations for CCDS 87898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 157458596 157458645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157458744 157458852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157461953 157462049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157464409 157464467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157464965 157465030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157465712 157465821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157467166 157467247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 157488443 157488511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGCAGCAAGGCTGTGTACGCGTTGCCTCCCTCCGGTGTGGCTCTGCAGGCAAGCCTGGCAGGGCCAAG
GCCGGCACTACCGAGCTGCACTCTGCACCGAGTTGAAGCAGCCCCTGACCATTCAAGAGGTGGCTCCCCG
CCCCGTCGGGCCACAGGAGGTCAGAGTTGATGTTCATTTCTGTGGTGTTAACTTTGCTGATATTTTGGCC
TGTCGTGGTCAGTATCAGGAAAAGCCTCCTCTTCCCTTTACACCGGGAATGGAGTTTTCTGGGGCTGTCT
TAGAGACAGGAACAGATGTCAGCACTGTGAAAAAGGGAGATCGAGTTATTGGAGTAAGTAGCTTTCATGC
TATGGCGGAGCAGTGCATCACGGACCAGAAGACCCTGTGGCGGATTCCAGAAAATGTCTCTTTGCAAGAT
GCTGCAGTGTTACCGGTATCTTATGGCACAGCTATTTTGGCTGTAGATCATCGGGCCCGCATCCAGCCCG
GAGAAACTGTTTTAGTGACAGCAGCTGCTGGAGCCACAGGCCTCGCAGTGATAGACGTGGCGACAAATGT
GTTCCGCGCCAAGATCAACGATGCCTTCCTTCATGTGATGCAGCGCAAATCCACGGGCAAGGTGCTCTTG
TCCCTCAAGTAA

Translation (213 aa):
MAARLCTRCLPPVWLCRQAWQGQGRHYRAALCTELKQPLTIQEVAPRPVGPQEVRVDVHFCGVNFADILA
CRGQYQEKPPLPFTPGMEFSGAVLETGTDVSTVKKGDRVIGVSSFHAMAEQCITDQKTLWRIPENVSLQD
AAVLPVSYGTAILAVDHRARIQPGETVLVTAAAGATGLAVIDVATNVFRAKINDAFLHVMQRKSTGKVLL
SLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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