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Report for CCDS87908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87908.1 Public Mus musculus 1 Firrm 23 108 98 CCDS HistoryNCBI Gene:381306Re-query CCDS DB by CCDS ID:87908.1Re-query CCDS DB by GeneID:381306See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87908.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097493.9 ENSMUSP00000095101.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097493.9Link to Ensembl Protein Viewer:ENSMUSP00000095101.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097493Re-query CCDS DB by Protein ID:ENSMUSP00000095101
Original member Current member NCBI NM_001357049.1 NP_001343978.1 Accepted alive Link to Nucleotide Sequence:NM_001357049.1Link to Protein Sequence:NP_001343978.1Re-query CCDS DB by Nucleotide ID:NM_001357049Re-query CCDS DB by Protein ID:NP_001343978Link to BLAST:NP_001343978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343978.1 927 Q3TQQ9-2 927 100% 0 0

Chromosomal Locations for CCDS 87908.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 163946350 163946425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163954149 163954339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163955337 163955456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163956828 163956908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163957493 163957597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163959288 163959401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163960577 163960672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163961964 163962086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163964470 163964655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163964735 163964824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163966408 163966459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163967074 163967156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163968154 163968340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163971847 163971961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163972207 163972352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163976744 163976808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163978080 163978160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163982665 163982803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163984324 163984408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163986005 163986167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163986887 163987027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163987606 163987710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163989705 163989793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163990720 163990759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163994610 163994720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2784 nt):
ATGTCGCAGGACGATGCGGAGGTGGCGAGCGGGGTCGTGCTGGAGGAACTCAGCAGCTGGTCGGAGGAGA
TGTGCCGTCGGGAGCTGCCTTCGGTGCTGCCCCGGCTCCTCTCTATGTATCAATGTTCTGAAAGTTGGAT
TGAACATATCCGAATTTTAAAAATCATTGTTGAAATGTTTTTGCCTCATATGAACCACCTGACACTGGAA
GAAACTTTGTTTTCCCAAGTTTTACCAAAGAGTATAAAATTGTTTGATGGCATGATATGTGAATTAACCA
GTGAAGCCAGAGAACTCTCCAGCCAAAATTTAGAAATCCAGGTCACCATAAGGAACATTTTACAAGCAAT
GGTGCAGGTCATAGGAGGTTTTACAGGATGTGTCCGTCATGTCTGTGCCACACAGAAATCTGTCTTTCTA
GGAAGTATTCAGAGTCTTCCCTCATTCATCCTGCATATAATTAAAAGTGCATTTGTGCACTGTAAGAACA
GCGAATGTGTGTATTCTGGGCGCTTACACCTAGTGTCAGACCTTCTCCAGGTTCTGTTCAAGGAGGCCTA
TTCTCTCCAGAAGCAGCTGATGGGACTGCTGGACACGGTTTGCCTGGACCCTTCAGTAGATGAGAATAAC
GCTTTGATAATGGTAGGAGTTATTCATTCATTATTGGATATCTGCTCTGTTATCTCTGGTATGGACCAAG
CATTTCATGCCAATACTTGGAAGTTTATTATTAAGCAGAGCCTCAAACACCACTCGGTTATAAAGAGCCA
GTTGAGACACAAAGAGATCATTTCTAGCTTGTGTGAAGACATTCTTTTCTCCTTTCATTCTTGTTTACAG
TTAGCTGAGCAGATAACACAGCCAGCTGCACAGGGTAATGCTGACTACAGGTTATTTCAAAAAACACTGA
AATTGTGTCGTTTCTTTGCTAACTCCCTTTTGCACTACACTAAGGAATGTCTTCCTTTCCTGTCTGATTC
TTGCTGTACTCTGCACCAGCTTTATCTGCAGATACACAGCAAGTTTCTAAGCCTCTGTGCTGCCAAGACT
TCCAAAGCCCAGCAGGAGGAAATAGCAAGCACTTTCCTTGTGCTACTGGACCCACTCATCAGTCAGCTGC
TCAAATCCCAGCCTTTTGTGCAGGCAGTTTTGGCGAGTAAACTTGCCCTGCCCTGTGAGCTGCAGCTCCC
ACAAGTCCTACTCCTGGTTGTCGCCATGGATAAACTGCCCTCTCAGCCACAGGACGTGCAGACCCTGTGG
AGCACAGAGGATATGACTAGGATGTCCATACTGAAAGGAATTTTCTACAATTTTGGCCAGTGTTCTGGTG
AACTCTCTCTGCCTACTCATTTACAAGGAACGAAGGGTAAAGGACAAGCTGAGGTGCCTGTCACGTTGTA
TCAGCATGTTTGTGTTCATCTGTGTGCATTTGTGGCTTCTTTTCATTCTTCATTGTTTCCTCGGCTGGAT
GCTGCTCTATTGAATGCTGTGCTTAGTACCAATATGAGTACCTCTTTGTTAGCGATGGATGTGTGGTGCT
TCCTTGCTCGGTATGGGACTGCTAAACTTGGTGCACACCATGTCACCCTAGTGGCTCATCTGGTTAAATC
TTGCCCTGGAAAATGTGTTCAGCTTACCAACCTCTCCATACTGTTGAAGCGCCTCCTTTTCTTCATGGCT
GCACCCCATCAGGTGCAATTCATCCAGAAATTTTCTCCAAAAGAAGCAGACAACTTGCATTTGTGGCAGT
ATATTTCCCTCCAGGCGTTCGATGCTGATCTCAGGAAGCCGGTTGCATGTGAATTGGTCAGAGTGTGCAG
AGCACAGTGCAGGAAGTGGTTGAGCAGCACTCGGACTCTGGCAGAGCTTGACTCTCTGAACACAGCACTT
TCTGTTGTACTTACTGTCTGCAATTCTGCTGGAGAAGCTTTGGATAGTAGACAGCTAACTGCAGTTACTG
AAGTTTTGGGTGAGCTTTGGACTTTCATAAACGTTGAACAAATTATCAGTCAGCCCTATGTTCAACAGGC
ATTTAGCCTTTTACTTCAACTGCTGGCGTTTTTCATCCAAACTGTAGATCTGCAGCTGATAAGTCAGGTT
GTAAATGTCCTGACTTCGGTGATTAAACTAGAGCCTCCTGACCACGTCTCTTTGGCAGTGCTGGATTTTA
TATCGTCTCTGGGCAAACTTTATATATCTCAAACTATCCGGGACAAGGTGCTGCCCAGCTTGTCTTGTAT
TCTTACTTCACTGATCGTCAACAAGAATTGGTTGCTAGAGCAACATACTTTGGAGGCATTTACTCAGTTT
GCTGAGGGAACAAAGCATGAAGAGATAGTTCCACAGTGTCTCGGTTCTGAAGAAATCAAGAACAAAGTTG
TATCCTTTTTGGAGAAGACAGAATCTGTAGATGAAGCTGAGGTTGCCACAGTGGACAATGTGAAGCAGGA
GAAAGGCACTTTCTGGGAACCTGCTGCTAAGGTGACTGTAGAAGAAGTGAAGACGTCAGCGTTTCAGCCT
CACACAAAGAGAGCCCGTCGGGTGTTGCCCTTTGAAGAAGAATACAGATCAGTATTTAAAGCTGCAGCAA
GGGCTTTGGAGACAACTGAGTTTTTACTCAAACACTCTCTTGCTCCAGCATGGCTGCTGCCAGAACTGGA
GGCGCTGCAAGGAAGGATCGAGAAGCTAAAACGCTGTGTGCTTACAGGTGGCAGCACCTGTGCGCAGTCT
CCTCGGCCTGCTCTGACAAGGTTTGACACACTCCCACTGCCAACCTGGCTCTGA

Translation (927 aa):
MSQDDAEVASGVVLEELSSWSEEMCRRELPSVLPRLLSMYQCSESWIEHIRILKIIVEMFLPHMNHLTLE
ETLFSQVLPKSIKLFDGMICELTSEARELSSQNLEIQVTIRNILQAMVQVIGGFTGCVRHVCATQKSVFL
GSIQSLPSFILHIIKSAFVHCKNSECVYSGRLHLVSDLLQVLFKEAYSLQKQLMGLLDTVCLDPSVDENN
ALIMVGVIHSLLDICSVISGMDQAFHANTWKFIIKQSLKHHSVIKSQLRHKEIISSLCEDILFSFHSCLQ
LAEQITQPAAQGNADYRLFQKTLKLCRFFANSLLHYTKECLPFLSDSCCTLHQLYLQIHSKFLSLCAAKT
SKAQQEEIASTFLVLLDPLISQLLKSQPFVQAVLASKLALPCELQLPQVLLLVVAMDKLPSQPQDVQTLW
STEDMTRMSILKGIFYNFGQCSGELSLPTHLQGTKGKGQAEVPVTLYQHVCVHLCAFVASFHSSLFPRLD
AALLNAVLSTNMSTSLLAMDVWCFLARYGTAKLGAHHVTLVAHLVKSCPGKCVQLTNLSILLKRLLFFMA
APHQVQFIQKFSPKEADNLHLWQYISLQAFDADLRKPVACELVRVCRAQCRKWLSSTRTLAELDSLNTAL
SVVLTVCNSAGEALDSRQLTAVTEVLGELWTFINVEQIISQPYVQQAFSLLLQLLAFFIQTVDLQLISQV
VNVLTSVIKLEPPDHVSLAVLDFISSLGKLYISQTIRDKVLPSLSCILTSLIVNKNWLLEQHTLEAFTQF
AEGTKHEEIVPQCLGSEEIKNKVVSFLEKTESVDEAEVATVDNVKQEKGTFWEPAAKVTVEEVKTSAFQP
HTKRARRVLPFEEEYRSVFKAAARALETTEFLLKHSLAPAWLLPELEALQGRIEKLKRCVLTGGSTCAQS
PRPALTRFDTLPLPTWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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