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Report for CCDS87976.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
87976.1 |
Public |
Mus musculus |
10 |
Ptprk |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:19272](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:87976.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:19272](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 10 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 87976.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000218359.1 |
ENSMUSP00000151986.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000218359.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000151986.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000218359](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000151986](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
|
NCBI |
NM_001359356.1 |
NP_001346285.1 |
Updated |
not alive |
![Link to Nucleotide Sequence:NM_001359356.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001346285.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359356](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001346285](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001359356.2 |
NP_001346285.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001359356.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001346285.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001359356](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001346285](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001346285.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 87976.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4338 nt): ATGGATGTGGCGGCCGCTGCGTTGCCTGCTTTTGTAGCTCTCTGGCTTCTGTACCCGTGGCCTCTCCTGG GGTCGGCCCTTGGCCAGTTCTCAGCAGGTGGCTGTACTTTTGATGATGGGCCAGGGGCTTGTGACTACCA CCAGGATTTATACGATGACTTTGAGTGGGTCCATGTCAGTGCGCAGGAACCTCATTACCTGCCCCCCGAA ATGCCTCAAGGTTCCTATATGGTTGTGGACTCCTCAAATCATGATCCTGGAGAAAAAGCCAGACTTCAGC TGCCTACCATGAAGGAGAATGACACCCACTGCATTGATTTCAGTTACCTGTTATATAGCCAGAAGGGGTT GAACCCTGGCACTTTGAATATCCTAGTTAGGGTGAATAAAGGACCTCTTGCTAATCCAATTTGGAATGTA ACTGGATTCACTGGTCGTGATTGGCTTCGGGCTGAACTAGCTGTGAGCACCTTTTGGCCCAATGAATACC AGGTAATATTTGAAGCTGAAGTCTCAGGAGGGAGAAGTGGTTATATTGCCATTGATGACATCCAAGTCCT GAGTTATCCTTGCGATAAATCTCCTCATTTTCTCCGCCTTGGTGATGTGGAGGTCAATGCTGGGCAGAAT GCTACATTTCAGTGCATTGCTACAGGGAGAGATGCTGTGCATAACAAGTTATGGCTGCAGAGACGCAATG GAGAAGACATACCCGTAGCCCAGACTAAGAACATAAATCACAGAAGATTTGCTGCCTCTTTCAGATTGCA AGAAGTGACAAAAACTGACCAGGATTTGTACCGCTGCGTAACTCAGTCAGAACGAGGTTCTGGGGTTTCC AATTTTGCTCAACTCATTGTGAGAGAACCACCTAGACCCATTGCTCCTCCCCAGCTGCTTGGTGTTGGGC CTACTTACTTGCTGATCCAACTAAATGCCAACTCTATTATTGGCGATGGCCCCATCATCCTGAAAGAAGT AGAGTATCGAATGACATCAGGATCTTGGACAGAAACCCATGCAGTCAACGCACCAACATATAAGTTGTGG CATTTAGACCCAGATACAGAATACGAGATCCGCGTCCTGCTTACCAGACCTGGCGAAGGGGGAACTGGGC TGCCAGGACCACCACTGATCACTAGAACGAAGTGTGCAGAACCTATGCGGACACCAAAGACTTTAAAGAT TGCTGAAATCCAGGCAAGGCGCATTGCAGTGGACTGGGAGTCCTTGGGCTACAACATCACTCGTTGCCAC ACTTTCAACGTCACTATCTGCTACCATTACTTCCGTGGCCACAATGAGAGCAGGGCAGACTGCTTGGACA TGGACCCCAAAGCCCCTCAGCATGTTGTGAACCATCTGCCACCTTACACAAATGTCAGCCTCAAGATGAT CCTAACCAACCCAGAGGGAAGGAAGGAGAGCGAAGAGACAATCATCCAAACTGATGAAGATGTGCCCGGG CCTGTGCCAGTCAAATCCCTCCAAGGAACATCCTTTGAAAACAAGATCTTCCTGAACTGGAAAGAGCCAC TGGAACCGAATGGAATTATCACTCAGTATGAGGTGAGCTATAGCAGCATAAGATCATTTGACCCTGCTGT TCCAGTGGCTGGGCCCCCACAGACTGTATCAAATTTATGGAATAGTACACACCATGTATTTATGCATCTT CACCCTGGAACCACCTACCAGTTTTTTATAAGAGCCAGCACTGTCAAAGGCTTTGGACCAGCAACAGCCA TCAATGTGACCACAAATATCTCAGCTCCAAGCTTACCTGACTATGAAGGAGTTGATGCCTCTCTGAATGA AACTGCCACCACCATCACAGTACTATTGAGGCCTGCACAAGCCAAAGGTGCTCCTATCAGTGCTTATCAA ATTGTTGTGGAGCAGCTACACCCACATCGAACGAAGCGTGAAGCAGGGGCCATGGAATGCTACCAGGTAC CGGTTACATACCAGAACGCCCTAAGTGGGGGCGCGCCCTATTACTTTGCCGCAGAACTTCCCCCTGGGAA TCTTCCCGAGCCTGCTCCCTTCACCGTGGGTGACAACCGGACCTATAAAGGCTTTTGGAACCCTCCCCTG GCCCCCCGCAAAGGATACAACATCTATTTCCAAGCGATGAGCAGTGTGGAGAAGGAAACTAAAACCCAAT GTGTACGAATTGCTACAAAAGCAGCAGCAACAGAAGAACCAGAAGTGATCCCAGACCCGGCAAAGCAGAC AGACAGAGTGGTGAAAATCGCGGGCATCAGTGCTGGCATCCTAGTGTTCATCCTTCTCCTGCTGGTTGTC ATAGTAATTGTGAAAAAGAGCAAGCTTGCTAAGAAGCGCAAAGATGCAATGGGGAACACACGTCAGGAGA TGACCCACATGGTGAATGCTATGGACCGAAGTTATGCTGACCAGAGCACCCTGCATGCAGAAGACCCCCT TTCCCTCACCTTCATGGACCAACATAACTTCAGTCCAAGATATGAGAACCACAGTGCCACAGCAGAGTCT AGTCGTCTCCTGGATGTTCCTCGATACCTCTGTGAAGGGACAGAGTCCCCTTATCAGACAGGACAGCTGC ACCCAGCCATCAGGGTGGCCGACTTACTGCAGCACATTAACCTCATGAAGACATCAGACAGCTATGGGTT CAAAGAGGAATACGAGAGCTTCTTTGAAGGCCAGTCAGCCTCTTGGGATGTGGCTAAAAAGGATCAAAAC AGAGCAAAGAACCGATACGGAAACATTATCGCATATGATCACTCCAGAGTCATCCTGCAACCTGTGGAAG ATGACCCTTCTTCAGATTACATTAATGCCAACTACATCGACATTTGGCTGTACAGGGATGGCTACCAGAG ACCAAGCCACTACATTGCAACTCAAGGCCCAGTTCATGAAACCGTATATGATTTTTGGAGGATGGTGTGG CAAGAGCAGTCTGCCTGTATTGTGATGGTCACTAATTTAGTGGAAGTTGGCCGGGTGAAATGCTATAAAT ATTGGCCTGATGATACTGAGGTTTATGGTGACTTCAAAGTCACCTGCGTAGAAATGGAGCCACTTGCTGA GTATGTCGTTAGGACATTCACCTTGGAAAGGAGGGGCTATAATGAAATCCGTGAAGTCAAACAGTTCCAC TTCACTGGCTGGCCTGACCATGGTGTTCCATACCACGCAACAGGGCTCCTGTCATTTATCCGGAGAGTCA AGCTATCTAACCCTCCCAGTGCTGGGCCCATTGTCGTACACTGCAGTGCTGGTGCTGGGCGCACAGGCTG TTACATTGTTATTGACATAATGCTGGACATGGCTGAAAGAGAGGGTGTGGTTGACATCTACAACTGTGTG AAAGCCTTACGATCTCGGCGCATTAATATGGTACAGACAGAGGAACAGTACATTTTTATTCATGATGCCA TTTTAGAAGCCTGCTTATGTGGAGAAACTGCCATCCCTGTGTGTGAATTTAAAGCTGCATATTTTGATAT GATTCGAATAGACTCTCAGACTAACTCCTCTCATCTCAAAGATGAATTTCAGACTCTGAATTCGGTCACC CCTCGACTACAAGCTGAAGACTGCAGCATAGCCTGCCTGCCAAGGAACCATGACAAGAACCGTTTCATGG ATATGCTCCCACCTGACAGATGTCTGCCTTTTTTAATTACAATTGATGGGGAGAGCAGTAACTACATCAA TGCTGCTCTTATGGATAGCTATAGGCAGCCAGCAGCTTTCATCGTCACACAATACCCACTGCCAAACACT GTGAAAGACTTCTGGAGATTAGTATATGATTACGGATGTACCTCCATCGTGATGCTAAATGAAGTGGACC TGTCTCAGGGCTGCCCACAGTACTGGCCAGAAGAAGGAATGCTGCGATATGGTCCTATCCAAGTGGAATG TATGTCTTGTTCAATGGACTGTGATGTGATCAATCGAATTTTTAGAATATGCAACCTAACGAGACCACAG GAGGGCTATCTGATGGTACAACAGTTCCAGTACCTAGGCTGGGCTTCTCATCGAGAAGTGCCTGGCTCCA AACGCTCGTTTTTGAAATTGATACTGCAGGTGGAAAAATGGCAAGAGGAATGTGAAGAAGGGGAAGGCCG GACAATCATCCACTGCTTGAATGGCGGTGGGCGCAGTGGCATGTTCTGTGCCATAGGCATTGTTGTGGAG ATGGTGAAGCGGCAAAATGTGGTGGATGTTTTCCATGCAGTAAAGACGCTGAGGAACAGCAAGCCAAACA TGGTGGAAGCCCCGGAGCAGTATCGTTTTTGCTATGATGTGGCGTTAGAGTACCTGGAGTCCTCATAG
Translation (1445 aa): MDVAAAALPAFVALWLLYPWPLLGSALGQFSAGGCTFDDGPGACDYHQDLYDDFEWVHVSAQEPHYLPPE MPQGSYMVVDSSNHDPGEKARLQLPTMKENDTHCIDFSYLLYSQKGLNPGTLNILVRVNKGPLANPIWNV TGFTGRDWLRAELAVSTFWPNEYQVIFEAEVSGGRSGYIAIDDIQVLSYPCDKSPHFLRLGDVEVNAGQN ATFQCIATGRDAVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQEVTKTDQDLYRCVTQSERGSGVS NFAQLIVREPPRPIAPPQLLGVGPTYLLIQLNANSIIGDGPIILKEVEYRMTSGSWTETHAVNAPTYKLW HLDPDTEYEIRVLLTRPGEGGTGLPGPPLITRTKCAEPMRTPKTLKIAEIQARRIAVDWESLGYNITRCH TFNVTICYHYFRGHNESRADCLDMDPKAPQHVVNHLPPYTNVSLKMILTNPEGRKESEETIIQTDEDVPG PVPVKSLQGTSFENKIFLNWKEPLEPNGIITQYEVSYSSIRSFDPAVPVAGPPQTVSNLWNSTHHVFMHL HPGTTYQFFIRASTVKGFGPATAINVTTNISAPSLPDYEGVDASLNETATTITVLLRPAQAKGAPISAYQ IVVEQLHPHRTKREAGAMECYQVPVTYQNALSGGAPYYFAAELPPGNLPEPAPFTVGDNRTYKGFWNPPL APRKGYNIYFQAMSSVEKETKTQCVRIATKAAATEEPEVIPDPAKQTDRVVKIAGISAGILVFILLLLVV IVIVKKSKLAKKRKDAMGNTRQEMTHMVNAMDRSYADQSTLHAEDPLSLTFMDQHNFSPRYENHSATAES SRLLDVPRYLCEGTESPYQTGQLHPAIRVADLLQHINLMKTSDSYGFKEEYESFFEGQSASWDVAKKDQN RAKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDIWLYRDGYQRPSHYIATQGPVHETVYDFWRMVW QEQSACIVMVTNLVEVGRVKCYKYWPDDTEVYGDFKVTCVEMEPLAEYVVRTFTLERRGYNEIREVKQFH FTGWPDHGVPYHATGLLSFIRRVKLSNPPSAGPIVVHCSAGAGRTGCYIVIDIMLDMAEREGVVDIYNCV KALRSRRINMVQTEEQYIFIHDAILEACLCGETAIPVCEFKAAYFDMIRIDSQTNSSHLKDEFQTLNSVT PRLQAEDCSIACLPRNHDKNRFMDMLPPDRCLPFLITIDGESSNYINAALMDSYRQPAAFIVTQYPLPNT VKDFWRLVYDYGCTSIVMLNEVDLSQGCPQYWPEEGMLRYGPIQVECMSCSMDCDVINRIFRICNLTRPQ EGYLMVQQFQYLGWASHREVPGSKRSFLKLILQVEKWQEECEEGEGRTIIHCLNGGGRSGMFCAIGIVVE MVKRQNVVDVFHAVKTLRNSKPNMVEAPEQYRFCYDVALEYLESS
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