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Report for CCDS87994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87994.1 Public Mus musculus 10 Ddo 23 108 98 CCDS HistoryNCBI Gene:70503Re-query CCDS DB by CCDS ID:87994.1Re-query CCDS DB by GeneID:70503See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87994.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000213503.1 ENSMUSP00000151066.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213503.1Link to Ensembl Protein Viewer:ENSMUSP00000151066.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213503Re-query CCDS DB by Protein ID:ENSMUSP00000151066
Original member NCBI NM_001316718.1 NP_001303647.1 Updated not alive Link to Nucleotide Sequence:NM_001316718.1Link to Protein Sequence:NP_001303647.1Re-query CCDS DB by Nucleotide ID:NM_001316718Re-query CCDS DB by Protein ID:NP_001303647
Current member NCBI NM_001316718.2 NP_001303647.1 Accepted alive Link to Nucleotide Sequence:NM_001316718.2Link to Protein Sequence:NP_001303647.1Re-query CCDS DB by Nucleotide ID:NM_001316718Re-query CCDS DB by Protein ID:NP_001303647Link to BLAST:NP_001303647.1

Chromosomal Locations for CCDS 87994.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 40631609 40631780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40632938 40633046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40637345 40637521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 40673686 40673752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGACACAGTGTGTATTGCGGTCGTTGGAGCTGGCGTGATAGGGCTGTCTACTGCAGCATGCATTTCCC
AACTGGTTCCCGGATGCACCGTCACTGTCATCTCAGACAGGTTCACTCCTGATACCACCAGTAATGTAGC
GGCTGGGATGCTTATTCCTCACACGTGTGCAGATACCCCGGTACCCACACAGAAGCGATGGTTTAGAGAG
ACCTTCGAGCATCTTTCTGAAATCGCCAAGTCTGCAGAGGCTGCAGATGCGGGTGTTCACCTGGTATCTG
GTTGGCAGATATTCCGCAGCGTCCCCGCTGAAGAAGTGCCTTTCTGGGCTGATGTGGTGCTGGGATTTCG
AAAGATGACAGAGGCTGAGCTGAAGCGGTTCCCTCAGTATGTGTTTGGCCAGGCTTTTACAACCCTGAAG
TGCGAGACTTCTGCCTACCTCCCGTGGCTGGAGAGAAGGTCATTTGAGACCCTGGAAGCCCAAGGCACAA
ACAGTTCAACTGAAGGCAAGGGAAGGAAAGCATAA

Translation (174 aa):
MDTVCIAVVGAGVIGLSTAACISQLVPGCTVTVISDRFTPDTTSNVAAGMLIPHTCADTPVPTQKRWFRE
TFEHLSEIAKSAEAADAGVHLVSGWQIFRSVPAEEVPFWADVVLGFRKMTEAELKRFPQYVFGQAFTTLK
CETSAYLPWLERRSFETLEAQGTNSSTEGKGRKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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