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Report for CCDS88074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88074.1 Public Mus musculus 10 Ccdc38 23 108 98 CCDS HistoryNCBI Gene:237465Re-query CCDS DB by CCDS ID:88074.1Re-query CCDS DB by GeneID:237465See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88074.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132214.7 ENSMUSP00000150407.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132214.7Link to Ensembl Protein Viewer:ENSMUSP00000150407.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132214Re-query CCDS DB by Protein ID:ENSMUSP00000150407
Original member Current member NCBI NM_001359749.1 NP_001346678.1 Accepted alive Link to Nucleotide Sequence:NM_001359749.1Link to Protein Sequence:NP_001346678.1Re-query CCDS DB by Nucleotide ID:NM_001359749Re-query CCDS DB by Protein ID:NP_001346678Link to BLAST:NP_001346678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346678.1 524 Q8CDN8-2 524 100% 0 0

Chromosomal Locations for CCDS 88074.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93555025 93555028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93555519 93555583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93562731 93562894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93563205 93563285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93565794 93565945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93567664 93567756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93569876 93569933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93570847 93570919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93574011 93574162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93575273 93575408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93578709 93578891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93579762 93579967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93581733 93581826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93582442 93582555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGGGTGCAGACAGAAAGAGGACGGTCCACGAGTTTATTAACGACCAAAGAGACAGATTTCTACTTGAGT
ATACAGTGTCAACCAAGAAAAAGACAATCAAAAGGTTTGAAAGACTCATAGCCATTAAAGAAAATCAACT
CAAAAAAGCTGAGAAAAAGCTCCAAGATGACGCATTGTCCTTTGAAGAATTCCTACGAGAAAATGACCAG
AGATCTGTAGATGCTCTCAAAATGGCAGCACAAGAAACAATAAACAAGCTCCAAATGACATCAGAGCTCA
AGAAAGCAAGCATGGAAGTTCAATCAATAAAGAGTGATATAGCAAAAACAGAGTTCCTCCTCAAGGAATA
CATGAAATATGGATTCTTCCTGCTGAAGTTGTCCCCAAAACAATGGCAAATACAGCAATCGCAAAAAAGG
GCCCAGTCGTCCAAAAGCAACCACATTCTTCCAAAAATCTTGGAAAAATTCTCCATAAATACAGCTAAAG
GAGATAACAGCATCGACTCAGACAAGATGTCAGTTTCAGAAGAATGGAGTTCAAGGCGAGGAAGCCAAGG
AGGAAGACACGGGAAACATACTTTGGGCCAAGACTCTAGGAAGTCATCTGGGTTCACTCGTCCTGAAAGC
ATGGCCTCCGAGGACAGTTTGGAGTACTTTCTAGAGGACGAGCTCGTGGAGTTTGATCTGCTGCCAGAGA
TTTATTTCAAGGAGCCAGAGGAGTTGCTGCAGGTCTTCACGGAGCTGGAAGAGCAGAACCTCACCTTGGT
TCAGTATTCCCAAGATGTGGATGAGAATCTCGAAGATGTCAACAAAAGAGAAAAATTTATACAGGATAAG
ATAAACAACAACATCTCCTTCCTGCTGGAGCACAAACATATGCTCAGGATGAACTGTGAACGAGAGGAGG
AGAAGGCAGCAGAGCTGGAGCTGAGGTCCAGGCTCTTCAGTTTTGGAGAATTCAATTCCGATGCTCAGAA
GCAGGCAATCCTGAGGCAGGAGCCTACATGGAAAGCGATTTACTTTGCTGAGAAGTTTATTGAGTTCCTC
TTGAGGAGTATCAGCCAGCCCGTGGCGAAAAAGGATCCCTTTCATCTCCCGAAATACATTATCTACCAGC
TCAAGAGACTGCAGAATCAAGTAAAACATCGAAGTGGCGAGGAAAAGCTAATAGACTCTCTTAGTAAAAA
GATCAATCAAGTGTATAGAGTCTGCATCGGAGATGCTGAGGTTGGCAGCTTGAATGCAGTTCAAAAACTG
GTCAAAGTAGAGTCTCGCCTGGTGGAGCTGAGCGACCTCATTGAATCTATTCCCAGAGAACACGTGGAAG
CGATCGAAAGGCTCAAACAGAAGGAGCGACGGCAAAAGCTGCGTGAAGAGAAGATGAAGGAAAAGCAGAG
ACACCAGGAGGAGCGGCTAAAAGCTGCTCTGGAAAGAGCAGTGGCACAACCCAAGAAGAAGTTGGGAAGA
CGACTTATCTACCGTTCGAAACCTCAATCTGCAGACAAACAAGAGCTCCTTTTAGTCAGTGATACAAGAT
CAAAATCACAGGACGAAGAGTACTTTTTTAGTTGA

Translation (524 aa):
MGADRKRTVHEFINDQRDRFLLEYTVSTKKKTIKRFERLIAIKENQLKKAEKKLQDDALSFEEFLRENDQ
RSVDALKMAAQETINKLQMTSELKKASMEVQSIKSDIAKTEFLLKEYMKYGFFLLKLSPKQWQIQQSQKR
AQSSKSNHILPKILEKFSINTAKGDNSIDSDKMSVSEEWSSRRGSQGGRHGKHTLGQDSRKSSGFTRPES
MASEDSLEYFLEDELVEFDLLPEIYFKEPEELLQVFTELEEQNLTLVQYSQDVDENLEDVNKREKFIQDK
INNNISFLLEHKHMLRMNCEREEEKAAELELRSRLFSFGEFNSDAQKQAILRQEPTWKAIYFAEKFIEFL
LRSISQPVAKKDPFHLPKYIIYQLKRLQNQVKHRSGEEKLIDSLSKKINQVYRVCIGDAEVGSLNAVQKL
VKVESRLVELSDLIESIPREHVEAIERLKQKERRQKLREEKMKEKQRHQEERLKAALERAVAQPKKKLGR
RLIYRSKPQSADKQELLLVSDTRSKSQDEEYFFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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