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Report for CCDS88097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88097.1 Public Mus musculus 10 Agap2 23 108 98 CCDS HistoryNCBI Gene:216439Re-query CCDS DB by CCDS ID:88097.1Re-query CCDS DB by GeneID:216439See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000217941.1 ENSMUSP00000151946.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217941.1Link to Ensembl Protein Viewer:ENSMUSP00000151946.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217941Re-query CCDS DB by Protein ID:ENSMUSP00000151946
Original member Current member NCBI NM_001301014.1 NP_001287943.1 Accepted alive Link to Nucleotide Sequence:NM_001301014.1Link to Protein Sequence:NP_001287943.1Re-query CCDS DB by Nucleotide ID:NM_001301014Re-query CCDS DB by Protein ID:NP_001287943Link to BLAST:NP_001287943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287943.1 1166 Q3UHD9-2 1166 100% 0 0

Chromosomal Locations for CCDS 88097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127079622 127080771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127082364 127082422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127082966 127083053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127083208 127083293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127083431 127083578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127085113 127085247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127085551 127085660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127086927 127087085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127087234 127087320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127087402 127087506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127087885 127088047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127088209 127088328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127089230 127089358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127090427 127090575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127090672 127090762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127090875 127091097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127091193 127091448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127091570 127091812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3501 nt):
ATGAGCCGGGGCGCGGGCGCGCTTCAGCGCCGGACAACGACCTACCTCATCTCGCTGACCCTGGTCAAGC
TCGAGTCGGTACCTCCGCCGCCGCCTTCTCCATCTGCAGCCGCAGCCGGCGCCCCCGGGGCCAGAGGCTC
CGAGCCCCGAGATCCTGGCAGCCCCCGAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTC
CACCGGCAGGATGCGCTGTGGATCAGTACCAGCAGCGCAGGCACCGGGGGTGCGGAGCCCCCCGCGCTGT
CCCCGGCTCCGGCCAGTCCGGCTCGCCCGGTCTCCCCGGCTCCGGGCCGCCGACTGTCCCTATGGGCCGC
CCCTCCGGGACCCCCGCTCTCCGGGGGGCTGAGCCCGGACTCCAAGCCGGGAGGCGCCCCCTCTTCCTCC
CGGCGCCCTCTACTCAGCAGCCCGAGCTGGGGGGGTCCGGAACCTGAAGGCCGGACGGGTGGCGGAGTCC
CGGGCTCGTCCTCCCCGCATCCTGGCACCGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTCCACCTGCTCC
CAAGCCTTTCAAGACCGTGACCACTAGTGGAGCCAAAGCCGGCGGGGGCAAGGGCGCAGGCAGCCGCCTG
TCATGGCCCGAAAGCGAGGGCAAACCCAGGGTCAAGGGGTCAAAGAGCACCGCCGGGACTGGAGCTTCTG
CCGCTGCGGCCGGCGGGGGAGGGAGCGCTGCAGTCACGACCTCTGGTGGGGTCGGGGCTGGGGCTGGAAC
CAGAGGGAAGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGACAATAGTGACTTACACCCAGGACCC
AGTGCCGGCTCTCCTCCGCTCACCGTGCCAGCAATCCCAGTTCCAGCCACTTCTGTCACTGCCACCTCCA
CGCAGCCCCTCGGGCCTGCACCCCCTATCACTCTGGAGCCACCAGCTCCAGGGCTGAAAAGGGGCCGGGA
GGGCGGCCGAGCGTCCACTCGTGACCGCAAGATGCTCAAGTTTATCAGCGGTATCTTCACCAAGAGCACA
GGAGGGCCTCCTGGTCCAGGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGGAGC
TGCTGGGAGCAGAACTACGCACCTCCCCTAAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAGCCGATC
AATTCCCGAACTGCGCCTGGGTGTGCTGGGTGATGTCAGGAGTGGGAAGTCGTCCCTCATCCATAGATTC
CTCACGGGTTCATACCAGGTGCTGGAGAAGATTGAGAGTGAGCAGTACAAGAAGGAGATGCTAGTGGATG
GGCAGACCCATCTGGTGCTGATCCGGGAGGAAGCAGGGGCACCCGATGCCAAGTTCTCAGGCTGGGCAGA
TGCTGTGATCTTCGTCTTCAGCCTGGAGGATGAGAGCAGCTTCCAGGCTGTGAGCCGTCTCCATGGGCAG
CTGAGCTCCCTCCGGGGGGAGGGGCGAGGAGGTCTGGCCCTGGCTCTGGTTGGGACCCAAGACAGGATCA
GTGCATCATCTCCTCGAGTGGTGGGTGATGCTCGAGCCAGGGCTCTGTGCACGGACATGAAGCGCTGTAG
CTACTACGAGACCTGCGCAACCTATGGGCTCAATGTGGACCGGGTCTTCCAGGAGGTGGCCCAGAAGGTG
GTGACCTTGCGCAAACAACAACAACTCCTGGCTGCTTGCAAATCCCTGCCTAGCTCGCCAAGCCATTCAG
CTGCATCTACTCCTGTAGCTGGGCAGGCTAGTAACGGGGGCCACACTAGCGACTACTCTTCTTCCCTCCC
ATCCTCACCCAACGTTGGACACCGGGAGCTCCGAGCTGAGGCAGCTGCGGTGGCTGGGTTGAGTACCCCA
GGGTCCTTACACAGAGCAGCCAAGCGGCGGACCAGCCTTTTTGCGAACCGTCGGGGCAGCGATGCTGAGA
AGCGGAGCTTAGACAGCCGGGGAGAGACAACAGGGAGTGGGCGAGCCATCCCCATCAAACAGAGCTTCCT
GCTAAAACGAAGTGGCAATTCCTTGAACAAAGAATGGAAGAAGAAATATGTGACCTTGTCCAGCAATGGC
TTTCTACTCTACCACCCCAGCATTAATGACTACATCCACAGTACACATGGCAAAGAGATGGACTTGTTAC
GAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGCTATCTCTGCTTTCGGCCCCTCAGCCAGCAT
CAACGGGTTGGTCAAGGATATGAGCACCGTCCAGATGGGTGAAGGCCCTGAAGCCTCTACTCCCATGCCA
AGCCCCAGCCCTAGCCCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAG
ACCGGAATTTGGCCCGTGCCCTTAGCACCGACTGTACCCCATCTGGAGATCTGAGTCCCCTGAGTCGGGA
ACCCCCACCTTCGCCCATGGTGAAGAAGCAGAGGAGGAAGAAACTGTCCACGCCTTCTAAGACTGAAGGC
TCGGCTGTGCAAGCTGAAGAGGAAAACTTTGAGTTCCTGATCGTGTCCAGCACTGGTCAGACGTGGCACT
TTGAGGCAGCCAGCTTTGAGGAGCGGGATGCTTGGGTTCAGGCCATTGAGAGTCAGATCCTGGCCAGTCT
GCAGTGCTGTGAGAGCAGCAAGGTCAAGCTGCGCACTGACAGCCAAAGCGAAGCTGTGGCCATCCAGGCG
ATCCGCAACGCAAAGGGAAACTCGACCTGTGTGGACTGTGGAGCTCCCAACCCCACGTGGGCCAGTTTGA
ATCTGGGCGCACTCATCTGCATCGAGTGTTCTGGCATCCACCGGAACCTGGGCACACACCTGTCCCGAGT
GCGTTCACTGGATTTGGATGACTGGCCGCGGGAGCTGACCCTGGTGCTGACGGCCATTGGCAACGACACA
GCCAACCGCGTGTGGGAGAGCGACACTCGAGGCCGTGCCAAGCCTACACGGGACTCTTCGCGGGAGGAGC
GTGAGTCGTGGATTCGCGCCAAGTATGAGCAGCTGCTGTTCCTGGCGCCTCTGGGCACCACGGAGGAGCC
GCTGGGCCGCCAACTGTGGGCCGCTGTGGAGGCCCAGGACGTGGCCGCCGTTCTGCTGCTTCTGGCCCAC
GCGCGACATGGGCCGCTCGACACCAGCGTGGAGGACCCGCAGCTCCGCTCGCCGCTGCACTTGGCGGCCG
AGCTCGCCCACGTTGTCATTACACAGCTGCTGTTGTGGTATGGCGCAGACGTGGCGGCCCGCGATGCGCA
AGGCCGCACGGCACTGTTCTATGCCCGCCAGGCTGGCAGCCAGCTGTGTGCAGACATCCTTCTCCAGCAC
GGCTGCCCGGGAGAGGGCGGCAGCACGGCCACCACGCCCAGCGCGGCCACCACCCCCAGCATTACCGCCA
CGCCCAGCCCGAGGCGCCGGAGCAGTGCTGCCAGCTTGGGCCGCGTGGACACCACGATCGCGCTGGTATA
G

Translation (1166 aa):
MSRGAGALQRRTTTYLISLTLVKLESVPPPPPSPSAAAAGAPGARGSEPRDPGSPRGSEEPGKKRHERLF
HRQDALWISTSSAGTGGAEPPALSPAPASPARPVSPAPGRRLSLWAAPPGPPLSGGLSPDSKPGGAPSSS
RRPLLSSPSWGGPEPEGRTGGGVPGSSSPHPGTGSRRLKVAPPPPAPKPFKTVTTSGAKAGGGKGAGSRL
SWPESEGKPRVKGSKSTAGTGASAAAAGGGGSAAVTTSGGVGAGAGTRGKLSPRKGKSKTLDNSDLHPGP
SAGSPPLTVPAIPVPATSVTATSTQPLGPAPPITLEPPAPGLKRGREGGRASTRDRKMLKFISGIFTKST
GGPPGPGPLPGPQGLSSSSGSRELLGAELRTSPKAVVNSQEWTLSRSIPELRLGVLGDVRSGKSSLIHRF
LTGSYQVLEKIESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVIFVFSLEDESSFQAVSRLHGQ
LSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCTDMKRCSYYETCATYGLNVDRVFQEVAQKV
VTLRKQQQLLAACKSLPSSPSHSAASTPVAGQASNGGHTSDYSSSLPSSPNVGHRELRAEAAAVAGLSTP
GSLHRAAKRRTSLFANRRGSDAEKRSLDSRGETTGSGRAIPIKQSFLLKRSGNSLNKEWKKKYVTLSSNG
FLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASINGLVKDMSTVQMGEGPEASTPMP
SPSPSPSSLQLPTDQTSKHLLKPDRNLARALSTDCTPSGDLSPLSREPPPSPMVKKQRRKKLSTPSKTEG
SAVQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQCCESSKVKLRTDSQSEAVAIQA
IRNAKGNSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSLDLDDWPRELTLVLTAIGNDT
ANRVWESDTRGRAKPTRDSSREERESWIRAKYEQLLFLAPLGTTEEPLGRQLWAAVEAQDVAAVLLLLAH
ARHGPLDTSVEDPQLRSPLHLAAELAHVVITQLLLWYGADVAARDAQGRTALFYARQAGSQLCADILLQH
GCPGEGGSTATTPSAATTPSITATPSPRRRSSAASLGRVDTTIALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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