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Report for CCDS88174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88174.1 Public Mus musculus 11 Stx8 23 108 98 CCDS HistoryNCBI Gene:55943Re-query CCDS DB by CCDS ID:88174.1Re-query CCDS DB by GeneID:55943See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88174.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108675.1 ENSMUSP00000104315.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108675.1Link to Ensembl Protein Viewer:ENSMUSP00000104315.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108675Re-query CCDS DB by Protein ID:ENSMUSP00000104315
Original member Current member NCBI NM_001361352.1 NP_001348281.1 Accepted alive Link to Nucleotide Sequence:NM_001361352.1Link to Protein Sequence:NP_001348281.1Re-query CCDS DB by Nucleotide ID:NM_001361352Re-query CCDS DB by Protein ID:NP_001348281Link to BLAST:NP_001348281.1

Chromosomal Locations for CCDS 88174.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67966501 67966517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67969772 67969871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67973233 67973496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGGCCCCGGACCCCTGGTTCTCCACATACGATTCTACGTGTCAGATAGCCCAAGAAATCGCTGAGAAGA
TTCAAGAACGAAATCAGTGTGAAAGAAGAGGTGAAAAGACACCGAAGCTTACCTTGACAATCAGAACGTT
GTTGAAGAATCTGAAGGTAAAGATCGACCTTTTGAAGGACTTACTGCTAAGAGCTGTGTCGACACGCCAG
ATGTATCCATGTAAACATTTCCACCTTTTCTGGAGTGGGAGGAAAAACAATCTTAAGACAGGAAGGAATC
TGGGCCATCCAGATTTTTCCACAGCTCAAGGAGGACTTGGTTTCCACACTGTTGCTATAATTTTACATTC
TGTCTTAAGTGTCTGCTCACTGTTACAGTGA

Translation (126 aa):
MAPDPWFSTYDSTCQIAQEIAEKIQERNQCERRGEKTPKLTLTIRTLLKNLKVKIDLLKDLLLRAVSTRQ
MYPCKHFHLFWSGRKNNLKTGRNLGHPDFSTAQGGLGFHTVAIILHSVLSVCSLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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