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Report for CCDS88194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88194.1 Public Mus musculus 11 Coro6 23 108 98 CCDS HistoryNCBI Gene:216961Re-query CCDS DB by CCDS ID:88194.1Re-query CCDS DB by GeneID:216961See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 88194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052515.11 ENSMUSP00000056862.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052515.11Link to Ensembl Protein Viewer:ENSMUSP00000056862.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052515Re-query CCDS DB by Protein ID:ENSMUSP00000056862
Original member Current member NCBI NM_001368670.1 NP_001355599.1 Accepted alive Link to Nucleotide Sequence:NM_001368670.1Link to Protein Sequence:NP_001355599.1Re-query CCDS DB by Nucleotide ID:NM_001368670Re-query CCDS DB by Protein ID:NP_001355599Link to BLAST:NP_001355599.1

Chromosomal Locations for CCDS 88194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77463913 77464110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77465666 77465788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77466195 77466324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77466418 77466599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77468266 77468370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77468461 77468606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77468910 77468967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77469057 77469287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77469376 77469501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGAGCCGGCGTGTTGTTCGGCAGAGCAAGTTCCGCCACGTGTTTGGTCAGGCAGCAAAGGCTGACCAGG
CCTATGAGGACATCCGGGTATCCAAGGTCACATGGGACAGCGCCTTCTGTGCCGTCAACCCCAAATTTCT
AGCCATTATTGTGGAGGCTGGAGGTGGAGGTGCCTTCATTGTCCTGCCTCTGGCCAAGACAGGACGAGTG
GATAAGAACTACCCACTGGTCACTGGGCACACTGGCCCTGTGCTGGACATTGACTGGTGCCCACACAATG
ACAACGTCATCGCCAGTGCCTCAGATGACACCACAGTCATGGTGTGGCAGATTCCAGACTACACCCCTGT
AAGAAACATCACAGAACCTGTCATCACACTCGAGGGCCACTCCAAGCGTGTGGGCATCCTGTCTTGGCAT
CCTACTGCCAGGAATGTCCTGCTCAGTGCAGGGGGTGATAATGTGATCATCATCTGGAATGTGGGCACTG
GGGAGGTACTGCTGAGCCTGGACGACATACACCCTGACGTCATCCACAGCGTGTGTTGGAACAGCAATGG
TAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCCGGAAGAGTCAAGTGGTT
GCGAACAATTTCGAAGAGCCAGTGGCCCTGCAGGAGATGGACACAAGCAACGGAGTGTTACTACCATTCT
ACGATCCTGACTCCAGCATCGTCTACTTGTGTGGCAAGGGTGACAGTAGCATTCGGTACTTTGAAATTAC
GGAAGAACCACCTTTCGTGCATTATCTGAACACATTTAGCAGCAAAGAACCGCAACGGGGTATGGGTTTC
ATGCCCAAGCGGGGACTGGATGTCAGCAAATGTGAAATCGCCAGGTTCTACAAGCTGCACGAACGAAAGT
GTGAACCCATCATCATGACTGTACCGCGAAAGTCAGACCTGTTCCAGGATGACCTATACCCAGACACGCC
TGGCCCTGAGCCTGCCCTGGAAGCTGATGAGTGGCTATCAGGTCAGGATGCAGAACCTGTGCTCATTTCG
CTGAAGGAAGGCTACGTTCCCCCCAAACACCGTGAGCTTCGGGTCACCAAACGCAACATCCTAGATGTGC
GCCCGCCGGCCAGTCCTCGGCGCAGCCAGTCCGCCAGCGAGGCCCCCTTGTCGCAGCAGCACACCCTGGA
GACATTGCTGGAGGAGATAAAGGCCCTCCGAGATCGAGTGCAGGCCCAAGAGGAGCGCATCACTGCGTTG
GAAAACATGCTCTGTGAGCTGGTGGACGGCACAGACTAG

Translation (432 aa):
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRV
DKNYPLVTGHTGPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPVITLEGHSKRVGILSWH
PTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKSQVV
ANNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGF
MPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLIS
LKEGYVPPKHRELRVTKRNILDVRPPASPRRSQSASEAPLSQQHTLETLLEEIKALRDRVQAQEERITAL
ENMLCELVDGTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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