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Report for CCDS88299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88299.1 Public Mus musculus 11 Gps1 23 108 98 CCDS HistoryNCBI Gene:209318Re-query CCDS DB by CCDS ID:88299.1Re-query CCDS DB by GeneID:209318See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88299.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208737.1 ENSMUSP00000147152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208737.1Link to Ensembl Protein Viewer:ENSMUSP00000147152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208737Re-query CCDS DB by Protein ID:ENSMUSP00000147152
Original member Current member NCBI NM_001363440.1 NP_001350369.1 Accepted alive Link to Nucleotide Sequence:NM_001363440.1Link to Protein Sequence:NP_001350369.1Re-query CCDS DB by Nucleotide ID:NM_001363440Re-query CCDS DB by Protein ID:NP_001350369Link to BLAST:NP_001350369.1

Chromosomal Locations for CCDS 88299.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120784310 120784342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120785121 120785213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120785700 120785881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786302 120786466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786552 120786687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120786772 120786849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787012 120787069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787380 120787465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787697 120787791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120787876 120787981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788062 120788142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788244 120788381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788462 120788596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120788670 120788744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGCCGCTGCCGGTTCAGGTGTTTAACTTGCAGGGGGCCGTGGAACCCATGCAGATTGATGTCGATCCGC
AGGAAGATCCGCAGAACGCACCTGATGTCAACTATGTGGTGGAGAATCCCACCCTGGATCTGGAGCAGTA
TGCAGCCAGCTACAGTGGCCTGATGCGAATTGAGCGACTACAGTTTATTGCTGACCGTTGCCCTCCACTG
AGGGTAGAGGCCTTGAAAATGGCTCTATCCTTCGTGCAGAGGACCTTCAATGTGGACATGTATGAAGAGA
TACACCGGAAGCTCTCCGAGGCTACCAGGGAGCTGCAGAATGCACCTGATGCCATCCCTGAGAGTGGAGT
GGAGCCCCCGCCCCTGGACACAGCCTGGGTGGAGGCCACTCGGAAGAAGGCTCTGTTGAAACTGGAGAAG
CTGGACACGGACTTGAAGAACTATAAGGGCAATTCTATCAAAGAGAGCATCAGGCGCGGCCACGATGACC
TGGGTGATCACTACCTGGACTGTGGGGACCTCAGCAATGCCCTCAAATGTTACTCACGAGCCCGAGACTA
CTGCACCAGTGCTAAGCATGTCATCAACATGTGCCTCAACGTCATCAAGGTCAGTGTCTACTTGCAAAAT
TGGTCTCATGTGTTAAGCTATGTCAGCAAGGCCGAGTCTACTCCAGAGATTGCTGAGCGGGGAGAGCGGG
ACAGCCAGACGCAAGCCATCCTCACCAAGCTCAAGTGTGCTGCAGGCTTGGCTGAGCTGGCCGCACGGAA
GTATAAGCAAGCAGCCAAGTGCTTCCTTCTGGCTTCCTTTGATCACTGTGACTTCCCAGAGCTGCTGTCC
CCCAGCAATGTGGCTGTCTATGGTGGCCTGTGTGCCTTAGCCACCTTTGACCGGCAGGAGCTGCAACGAA
ATGTCATCTCCAGCAGTTCCTTCAAGCTGTTCCTGGAGCTGGAGCCACAGGTCAGAGACATCATCTTCAA
ATTCTATGAATCCAAGTATGCCTCATGCTTGAAGATGCTGGACGAGATGAAGGATAACCTGCTCCTGGAC
ATGTACCTGGCCCCTCACGTCAGGACACTGTACACCCAGATTCGTAACCGGGCTCTTATCCAATACTTCA
GCCCCTATGTGTCAGCTGATATGCACAAGATGGCTGCAGCCTTCAACACAACAGTTGCAGCTCTGGAAGA
TGAGCTGACACAGCTCATTCTGGAGGGCCTTATTAATGCCCGCATCGACTCACACAGCAAGATACTGTAT
GCTCGAGATGTGGATCAGCGTAGCACCACCTTTGAGAAGTCCCTGCTGATGGGCAAGGAATTCCAACGAC
GTGCCAAAGCTATGATTCTGAGAGCAGCTGTGCTCCGCAACCAGATCCATGTCAAGTCTCCTCCTAGAGA
AGGGAGCCAAGGGGAGCTGACTCCAGCCAACAGCCAGTCACGCATGAGTACCAACATGTGA

Translation (486 aa):
MPLPVQVFNLQGAVEPMQIDVDPQEDPQNAPDVNYVVENPTLDLEQYAASYSGLMRIERLQFIADRCPPL
RVEALKMALSFVQRTFNVDMYEEIHRKLSEATRELQNAPDAIPESGVEPPPLDTAWVEATRKKALLKLEK
LDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQN
WSHVLSYVSKAESTPEIAERGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLASFDHCDFPELLS
PSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLD
MYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILY
ARDVDQRSTTFEKSLLMGKEFQRRAKAMILRAAVLRNQIHVKSPPREGSQGELTPANSQSRMSTNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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