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Report for CCDS88376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88376.1 Public Mus musculus 12 Gpatch2l 23 108 98 CCDS HistoryNCBI Gene:70373Re-query CCDS DB by CCDS ID:88376.1Re-query CCDS DB by GeneID:70373See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071106.5 ENSMUSP00000065858.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071106.5Link to Ensembl Protein Viewer:ENSMUSP00000065858.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071106Re-query CCDS DB by Protein ID:ENSMUSP00000065858
Original member Current member NCBI NM_001324488.1 NP_001311417.1 Accepted alive Link to Nucleotide Sequence:NM_001324488.1Link to Protein Sequence:NP_001311417.1Re-query CCDS DB by Nucleotide ID:NM_001324488Re-query CCDS DB by Protein ID:NP_001311417Link to BLAST:NP_001311417.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311417.1 408 Q6PE65-2 408 100% 0 0

Chromosomal Locations for CCDS 88376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86244045 86244706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86256868 86256932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86260577 86260753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86261616 86261695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86265182 86265249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86267144 86267183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86268976 86269061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86288800 86288848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGGATGAGCTAGTGCATGACCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGAGC
TGTGGGAGGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGAAGCG
CCGGTCTGACTTTACTCACCTGGCAGAGCACGCCTGCTGCTTCAGCGAGGCCTCTGAGTCAAGTCTGGAT
GAAGCCACCAAGGACTGCCGAGAAGTGGCTCCGCTCACCAACTTCAGTGACTCTGATGACACGGTGGTGG
CCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCTTGGCCCGAGTCTGACTCCTT
TACGGAAAACGCACCTTGTCGACCCCTCAGGCGCCGGCGGAAGGTGAAGCGAGTGACGTCCGAGGTGGCT
GCCAGCCTTCAGCAGAAGCTGAAAGTGTCAGATTGGAGCTATGAGAGAGGCTGCAGGTTCAAGTCTGCCA
AGAAGCAGCGTCTATCCCGCTGGAAGGAGAATACTCCCTGGACCTCATCTGGCCATGGGCTGTGTGAATC
AGCAGAGAATCGGACTTTCCTAAGCCAACCAGGAAGGAAAGAAAGGATGGAGTGCGAAGCCGAAGAGCAG
AAGCACGGCTCTGACGAGAACATGTCCGAGTGTGACACTAGCAGTGTGTGCAGCAGCAGTGACACGGGGC
TCTTCACCAATGATGAAGGACGACAAGGGGATGATGAGCAGAGTGATTGGTTTTATGAAGGAGAATGTGT
CCCCGGATTCACTGTCCATAACCTTCTGCCCAAGTGGGCTCCTGATCACTGCACTGAAGTAGAAAGGATG
GACTCCGGCCTGGATAAACTCTCAGACCCCACGTTCCTTTTACCTTCCCGGCCAGCTCAAAGAGGATACC
ATGGTCGTCTGAATAGGTTGCCAGGAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAAGGCTGCCTGG
GAAGGAGGCGAGCATGAGCAGCCTGGGGACGGAGAGGATCGGCCATACCATCAGTGACCCCCGGCAGACA
GATTTCTGGTTACCATCAGCTGGGAAAAGAGAACGGAATCAGTTTAATCCACTCTCCCCTCTTTACTCCC
TGGACGTTCTTGCTGATGCTTCTCATCGAAGGTGCTCACCTGCACACTGCTCTGCCAGTGCACCCAGATG
TTCTGGAGCCGGCCATCCCAGCTCAGAAGCCTCCTGA

Translation (408 aa):
MDELVHDLASALEQTSEQSKLGELWEEMALSPRQQRRQLRKRRGRKRRSDFTHLAEHACCFSEASESSLD
EATKDCREVAPLTNFSDSDDTVVAKRHPALSAIIRGKQHSWPESDSFTENAPCRPLRRRRKVKRVTSEVA
ASLQQKLKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLCESAENRTFLSQPGRKERMECEAEEQ
KHGSDENMSECDTSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGECVPGFTVHNLLPKWAPDHCTEVERM
DSGLDKLSDPTFLLPSRPAQRGYHGRLNRLPGAAARCLRKGRRRLPGKEASMSSLGTERIGHTISDPRQT
DFWLPSAGKRERNQFNPLSPLYSLDVLADASHRRCSPAHCSASAPRCSGAGHPSSEAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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