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Report for CCDS88404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88404.1 Public Mus musculus 12 Ppp2r5c 23 108 98 CCDS HistoryNCBI Gene:26931Re-query CCDS DB by CCDS ID:88404.1Re-query CCDS DB by GeneID:26931See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000221715.1 ENSMUSP00000152865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221715.1Link to Ensembl Protein Viewer:ENSMUSP00000152865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221715Re-query CCDS DB by Protein ID:ENSMUSP00000152865
Original member Current member NCBI NM_001081458.3 NP_001074927.1 Accepted alive Link to Nucleotide Sequence:NM_001081458.3Link to Protein Sequence:NP_001074927.1Re-query CCDS DB by Nucleotide ID:NM_001081458Re-query CCDS DB by Protein ID:NP_001074927Link to BLAST:NP_001074927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074927.1 452 Q60996-2 452 100% 0 0

Chromosomal Locations for CCDS 88404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110485859 110485952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110522491 110522690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110544075 110544185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110545595 110545687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110545771 110545901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110551062 110551121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110552785 110552893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110554843 110554896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110561298 110561468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110567728 110567855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110568954 110569055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110570696 110570801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGTTGACATGTAATAAAGCGGGCAGCGGGATGGTGGTGGATGCGGCCAGCTCCAACGGGCCTTTCCAGC
CCGTGGCCCTTCTCCACATTCGAGATGTTCCTCCTGCGGATCAAGAGAAGCTTTTTATCCAGAAGCTACG
CCAGTGTTGTGTCCTCTTTGACTTTGTCTCTGACCCACTGAGTGACCTGAAGTGGAAGGAAGTAAAGCGC
GCTGCGCTGAGCGAGATGGTGGAGTATATCACCCACAACCGGAACGTGATCACGGAGCCCATTTACCCCG
AGGCCGTCCACATGTTTGCAGTTAACATGTTCCGAACCTTGCCACCTTCCTCCAATCCCACGGGAGCAGA
ATTCGACCCAGAAGAGGATGAACCAACGTTAGAAGCAGCCTGGCCTCATCTGCAGCTTGTTTATGAATTT
TTCTTAAGATTTTTAGAGTCTCCAGATTTCCAACCCAATATAGCAAAGAAATATATTGATCAGAAGTTTG
TATTGCAGCTTCTAGAGCTGTTTGACAGCGAGGATCCTCGGGAGAGAGATTTTCTAAAAACCACCCTGCA
CAGAATCTATGGGAAGTTCTTAGGCCTGCGTGCTTACATCAGGAAACAGATCAATAATATATTTTATAGG
TTTATCTATGAGACAGAGCATCACAATGGCATAGCGGAGTTACTGGAGATCCTGGGAAGTATAATTAATG
GATTTGCCTTACCACTGAAGGAGGAACACAAGATTTTCCTGCTGAAGGTGTTGCTGCCCTTGCACAAAGT
GAAGTCCCTGAGTGTCTACCATCCCCAGCTGGCGTACTGTGTCGTGCAGTTTTTAGAGAAGGACAGCACC
CTCACTGAACCAGTGGTAATGGCACTTCTCAAATACTGGCCAAAGACTCACAGTCCAAAAGAAGTAATGT
TCTTAAATGAATTAGAAGAAATTTTAGATGTAATTGAACCATCAGAGTTTGTGAAGATCATGGAGCCTCT
TTTCCGACAGTTAGCCAAATGTGTTTCCAGCCCTCACTTCCAGGTGGCCGAGCGGGCGCTCTATTACTGG
AACAACGAGTACATCATGAGTTTAATCAGTGACAACGCAGCGAAGATTCTGCCCATCATGTTTCCGTCCT
TATACCGCAACTCAAAGACCCACTGGAACAAGACAATACACGGCTTGATATACAACGCCCTGAAACTCTT
CATGGAGATGAACCAAAAACTCTTCGATGACTGCACTCAGCAGTTCAAAGCAGAGAAACTCAAAGAGAAG
CTAAAAATGAAAGAGCGAGAAGAAGCATGGGTTAAAATAGAAAATCTAGCCAAAGCGAATCCCCAGGTAC
TAAAAAAGAGAGTAACTCGGGAGTGTTGA

Translation (452 aa):
MLTCNKAGSGMVVDAASSNGPFQPVALLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKR
AALSEMVEYITHNRNVITEPIYPEAVHMFAVNMFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEF
FLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYR
FIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST
LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW
NNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEK
LKMKEREEAWVKIENLAKANPQVLKKRVTREC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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