NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS88428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88428.1 Public Mus musculus 13 Prl3d1 23 108 98 CCDS HistoryNCBI Gene:18775Re-query CCDS DB by CCDS ID:88428.1Re-query CCDS DB by GeneID:18775See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082079.4 ENSMUSP00000080731.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082079.4Link to Ensembl Protein Viewer:ENSMUSP00000080731.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000082079Re-query CCDS DB by Protein ID:ENSMUSP00000080731
Original member Current member NCBI NM_008864.3 NP_032890.2 Accepted alive Link to Nucleotide Sequence:NM_008864.3Link to Protein Sequence:NP_032890.2Re-query CCDS DB by Nucleotide ID:NM_008864Re-query CCDS DB by Protein ID:NP_032890Link to BLAST:NP_032890.2

Chromosomal Locations for CCDS 88428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27094253 27094283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27094855 27095009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27096456 27096563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27098575 27098754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27099924 27100121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGCAGCTGACTTTGAATCTTTCAGGCTCCGGAATGCAATTGTTGCTGCTGGTGTCAAGCCTACTCCTTT
GGGAGAATGTGTCCTCCAAACCAACTGCCATGGTGCCCACTGAAGACCTGTATACTCGTTTGGCTGAACT
GTCTCATAATACATTTATCTTGGCCGCAGATGTGTATAGGGAATTTGATTTGGATTTTTTCGATAAAACT
TGGATAACAGACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACTCCAGAGAATCGAGAGGAAG
TCCACGAAACTAAAACTGAAGACCTTCTGAAAGCAATGATCAATGTTTCAATTTCCTGGAAAGAACCTCT
GAAACACCTGGTGTCTGCACTGACGGCTCTCCCAGGAGCTTCTGAGAGTATGGGGAAAAAAGCTGCTGAC
ATTAAGGGCAGAAACCTTGTAATTCTGGAGGGACTTCAGACAATATACAACAGGACTCAGGCTAACATTG
AAGAAAATGAAAATTTTGACTACCCTGCTTGGTCTGGACTCGAAGAACTGCAGTCACCTAATGAAGACAC
TCATCTTTTTGCCGTTTATAATCTATGCCGCTGCATTAAAAGGGACATCCATAAGATAGACAGCTATATC
AAAGTCTTGAGGTGCCGAGTTGTCTTTCAGAACGAATGTTGA

Translation (223 aa):
MQLTLNLSGSGMQLLLLVSSLLLWENVSSKPTAMVPTEDLYTRLAELSHNTFILAADVYREFDLDFFDKT
WITDRTLPLCHTASIHTPENREEVHETKTEDLLKAMINVSISWKEPLKHLVSALTALPGASESMGKKAAD
IKGRNLVILEGLQTIYNRTQANIEENENFDYPAWSGLEELQSPNEDTHLFAVYNLCRCIKRDIHKIDSYI
KVLRCRVVFQNEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH