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Report for CCDS88821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88821.1 Public Mus musculus 15 Phf21b 23 108 98 CCDS HistoryNCBI Gene:271305Re-query CCDS DB by CCDS ID:88821.1Re-query CCDS DB by GeneID:271305See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88821.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016768.11 ENSMUSP00000016768.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016768.11Link to Ensembl Protein Viewer:ENSMUSP00000016768.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000016768Re-query CCDS DB by Protein ID:ENSMUSP00000016768
Original member Current member NCBI NM_001356573.1 NP_001343502.1 Accepted alive Link to Nucleotide Sequence:NM_001356573.1Link to Protein Sequence:NP_001343502.1Re-query CCDS DB by Nucleotide ID:NM_001356573Re-query CCDS DB by Protein ID:NP_001343502Link to BLAST:NP_001343502.1

Chromosomal Locations for CCDS 88821.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84787228 84787449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84791065 84791168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84791354 84791429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84791783 84791941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84793896 84793918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84795080 84795134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84797323 84797399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84798643 84798694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84803454 84803585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84804760 84805110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84808066 84808158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84854739 84854804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84854991 84855008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGAGGCGGCAGCCACAGAACGGCGACCTCAAGAAGCAGCTCCACGAAAGGCAGCCACGGATCGCAGCGC
TCAGCGACAAACAAGCTTTGGGATCCACCACTGCAGTGCCTGTCACAGGTCCTCAGGTCAGCTCCCTGCA
GAGGTTGGCTGGGCAAGGAGCAGCAGTGCTACCTCAGGTTAGGCCAAAGACTCTGATTCCAGACAGCCTC
CCTGTCACCCCGGGCAGGGACCGGCCACCCAAGCAACCCCCAACATTCCAAAAGGCCACTGTGGTCAGCA
TCAAGAACCCCAGCCCAGCCCTCCCCACTGCCAACAACACCGTCAACCATGTGCCAACACCCAGCAGCCA
GACCCAGGCCCTCACCGAGCCCACCGCCATCACCTCACCCCTGAGCAGTGCCGGGGTGGCCTATGCCATC
ATCTCCACCTCCCCCAGCAATGCTGCCACCATCACCCCCAGCACCACTGTGCCCGTGGCCAGCGACGGCA
TCAAAGTGCAGCCCCTCCTCATCAGTGCTGACAAAAAGGTTATCATCATTCAGCCACAAGTGAAGACACA
GCCAGAGAGTTCAGCAGAGCCCGAGCCACCCACGGAGGAGCCATCTCAGGGAGCTCAGGCCACCAAGGAA
GATCAGCCCCCCAGCAAGGAGAATCCTGAGAAAATCGCCTTCATGGTAGCTCTAGGCCTGGTCACAACGG
AACACCTAGAAGAGATCCAGAGCAAGCGGCAGGAGCGGAAGCGGAGGAGCACAGCCAACCCTGCCTATAG
CGGCTTCTTGGAGACCGAGAGGAAGCGGCTGGCCTCCAGTTATCTCCACAACCCCTTGTTCCTCACAGCA
CGAGCCAATGAGGACCCCTGCTGGAAGGGTGAAATCACCCATGATGAATTCTGTGCTGCCTGCAAGCGAG
GAGCCAGCCTGCAACCCTGCGGCACCTGTTCAGGGGCCTACCACCTCAGCTGCCTGGACCCGCCCCTTAA
GACGCCACCCAAGGGCCTGTGGGTCTGCCCCAAGTGCCAGCGGAAGGCCTTAAAGAAAGATGAGGGTGTG
CCCTGGACTGGGATGCTGGCCATTGTACATTCCTATGTCACCCACAAGACAGTGAAAGAAGAGGAGAAGC
AGAAATTGTTGCAGCGTGGCAGTGAACTGCAGTCTGAGCACCAGCAGCTAGAGGAGCGGGACCGGCAGCT
GGCCTCAGCTGTGAAGAAATGCTTGGAGCTGAAGACAAGCCTCCTGGCCCGCCAACGGGGCACACAGTCA
TCGCTGGACCGCATCCGGGCCCTCCTCAGACTGATCCAGGGTGAGCAGATGCTTCAGGTCGCTATGGCAA
CCACCAGCCCCACCCCACTTCTGGCCGGGCCCTGGACCAAGCCTTCCACCACCACCACCATGCGCACTAC
CCTCCAGCACCCCCAGAATCACAACTGA

Translation (475 aa):
MRRQPQNGDLKKQLHERQPRIAALSDKQALGSTTAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSL
PVTPGRDRPPKQPPTFQKATVVSIKNPSPALPTANNTVNHVPTPSSQTQALTEPTAITSPLSSAGVAYAI
ISTSPSNAATITPSTTVPVASDGIKVQPLLISADKKVIIIQPQVKTQPESSAEPEPPTEEPSQGAQATKE
DQPPSKENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGFLETERKRLASSYLHNPLFLTA
RANEDPCWKGEITHDEFCAACKRGASLQPCGTCSGAYHLSCLDPPLKTPPKGLWVCPKCQRKALKKDEGV
PWTGMLAIVHSYVTHKTVKEEEKQKLLQRGSELQSEHQQLEERDRQLASAVKKCLELKTSLLARQRGTQS
SLDRIRALLRLIQGEQMLQVAMATTSPTPLLAGPWTKPSTTTTMRTTLQHPQNHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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