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Report for CCDS89043.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
89043.1 |
Public |
Mus musculus |
17 |
Fance |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:72775](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:89043.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:72775](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Non-AUG initiation codon |
Sequence IDs included in CCDS 89043.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000114804.10 |
ENSMUSP00000110452.4 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000114804.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000110452.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000114804](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000110452](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001163820.1 |
NP_001157292.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001163820.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001157292.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001163820](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001157292](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001157292.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 89043.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also. |
Translation Exceptions: replace the symbol L (codon CTG) with M at amino acid position 1
Nucleotide Sequence (1455 nt): CTGGCGACGCCGGGGTCGGACTCCGTAGCCTCGGCCGGAGCGGCGCCCTGGGCGAGCCTGGAGGCCCCTG CCCGCCTCCTGCTTCAGGCGCTACAGGCAGGGCCTGAGGGTGCGCGGCGCGGGCTAGGGGTTCTGCGCGC CCTCGGCCGCCGCGCGGAGCACTTCCCTTGGGATGGCTTCCTGGAGGCGCTGGGCCACTTAGAGCCCGAG GTGCGGGGCCCCGACGGCCGCCTAGAGCTGGTCCCACTGTTGCTCCGGCTGCCTGGGGTCTGCCAGAAGA ACCTGCTGTCCCTGCTGCTGGCTCTCCTACCATCCTTACCTGAAAGCGGACTCCGCTCTGTGCTGCAGCT CCACCATCAGGATGTGTCCTCTACCACTGATGCCTGGCTCCATGCCCTGGGGGAGCTGCTGCGAAGGGAT GTGGGGGTTGGAGTCGCTGAGGGATCTTCTCCATTGACCAGAAGCTGTCAGTTACAGCTCCGGGACCTGT GTGGGCGGCTGGGCCAAGGGGGGAGGGGGCTGAAACTGGCCCTGGCTCCAGATCCTGAACAAGAGGACAG ACTCTCACAGCTTTGCGGGAAACGGACGAAAGAGCCAGAAGAGGCTGCCAGCCCTGAGTCAGAGAGATCC CCTAAAAGGTTCCGGGGCTGTGAGGAGGCGGTGGAAGGAAAGGAACCGGAGGAGAGACCCACGCTGGAGT CGCTGGGATCCCCACCAGATGCAGGAGGCGTGTTGCCTGACACTGACGCCCAGGCTCCGGAGACTGGCCC TGGCGTGGAGGGTCCCAAGGGTCCCGCTGAGAGTGTGGAGTTGCCCAAAGTTGTCCAGGACCAGGTGCCC AGGCTGCAGCTGCTGCTGAAGGCCTTCCAGGAGGGGCTGGAGGGTCAGGAGAAGCCCCTAGTGGACCTGC AGTTTCTTCATGAATGTAGTCCCAGCGAGATGGAGTTGCTATGCAGCGAACTACAGCTACCCCAGCTCCC TGACGGAGGTCTCCTGCAGCTCTGCAGCCACCTGATGGGTCTCACACCAGCCCTCAGCCTCAGCAATGCC TCTGTGCTGGCCAGGAGCCTCTTTCTTGACCGGATCCGCTCCCTGCCGTCTTCTGCCTCCAGGCTTCTCA GAGTGGCCCTCGTCTCCTTCTGTGTAAAGTACACCTACGCCATCTGCAGGGCTGTCCTCTGTCCCTTGCT CCAGGACCCTCGTGTAGGTCCTGCGCAGACCGAGTTACTGTGTTCCCTCATAAAGGATGAGTCCCTGGAG TCAGACATGCAGGTCCAGATTTTGGGGCAGGTCCTGGAGCTGGCCTGGCGAGAAGAGACGTTCCTGGTGT TGCAGACGCTCCTGGAACGGCAGATCACAGAGCAGCAGAGCCTGGACCTGGCTGTGGCCCTAGAGCCCAA CGCCACCTTCCTGAAGAAGGCCCTGCAAGCAGCGCTGAGACATGTGACCCACTGA
Translation (484 aa): MATPGSDSVASAGAAPWASLEAPARLLLQALQAGPEGARRGLGVLRALGRRAEHFPWDGFLEALGHLEPE VRGPDGRLELVPLLLRLPGVCQKNLLSLLLALLPSLPESGLRSVLQLHHQDVSSTTDAWLHALGELLRRD VGVGVAEGSSPLTRSCQLQLRDLCGRLGQGGRGLKLALAPDPEQEDRLSQLCGKRTKEPEEAASPESERS PKRFRGCEEAVEGKEPEERPTLESLGSPPDAGGVLPDTDAQAPETGPGVEGPKGPAESVELPKVVQDQVP RLQLLLKAFQEGLEGQEKPLVDLQFLHECSPSEMELLCSELQLPQLPDGGLLQLCSHLMGLTPALSLSNA SVLARSLFLDRIRSLPSSASRLLRVALVSFCVKYTYAICRAVLCPLLQDPRVGPAQTELLCSLIKDESLE SDMQVQILGQVLELAWREETFLVLQTLLERQITEQQSLDLAVALEPNATFLKKALQAALRHVTH
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