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Report for CCDS89196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89196.1 Public Mus musculus 18 Aqp4 23 108 98 CCDS HistoryNCBI Gene:11829Re-query CCDS DB by CCDS ID:89196.1Re-query CCDS DB by GeneID:11829See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235044.1 ENSMUSP00000157000.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235044.1Link to Ensembl Protein Viewer:ENSMUSP00000157000.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235044Re-query CCDS DB by Protein ID:ENSMUSP00000157000
Original member Current member EBI ENSMUST00000234643.1 ENSMUSP00000157060.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234643.1Link to Ensembl Protein Viewer:ENSMUSP00000157060.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234643Re-query CCDS DB by Protein ID:ENSMUSP00000157060
Original member Current member EBI ENSMUST00000234473.1 ENSMUSP00000157152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234473.1Link to Ensembl Protein Viewer:ENSMUSP00000157152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234473Re-query CCDS DB by Protein ID:ENSMUSP00000157152
Original member Current member EBI ENSMUST00000234518.1 ENSMUSP00000157239.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234518.1Link to Ensembl Protein Viewer:ENSMUSP00000157239.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234518Re-query CCDS DB by Protein ID:ENSMUSP00000157239
Original member Current member EBI ENSMUST00000234466.1 ENSMUSP00000157324.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234466.1Link to Ensembl Protein Viewer:ENSMUSP00000157324.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234466Re-query CCDS DB by Protein ID:ENSMUSP00000157324
Original member Current member EBI ENSMUST00000234053.1 ENSMUSP00000157337.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234053.1Link to Ensembl Protein Viewer:ENSMUSP00000157337.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234053Re-query CCDS DB by Protein ID:ENSMUSP00000157337
Original member Current member EBI ENSMUST00000234391.1 ENSMUSP00000157347.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234391.1Link to Ensembl Protein Viewer:ENSMUSP00000157347.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234391Re-query CCDS DB by Protein ID:ENSMUSP00000157347
Original member Current member NCBI NM_001308641.1 NP_001295570.1 Accepted alive Link to Nucleotide Sequence:NM_001308641.1Link to Protein Sequence:NP_001295570.1Re-query CCDS DB by Nucleotide ID:NM_001308641Re-query CCDS DB by Protein ID:NP_001295570Link to BLAST:NP_001295570.1
Original member Current member NCBI NM_001308642.1 NP_001295571.1 Accepted alive Link to Nucleotide Sequence:NM_001308642.1Link to Protein Sequence:NP_001295571.1Re-query CCDS DB by Nucleotide ID:NM_001308642Re-query CCDS DB by Protein ID:NP_001295571Link to BLAST:NP_001295571.1
Original member Current member NCBI NM_001308643.1 NP_001295572.1 Accepted alive Link to Nucleotide Sequence:NM_001308643.1Link to Protein Sequence:NP_001295572.1Re-query CCDS DB by Nucleotide ID:NM_001308643Re-query CCDS DB by Protein ID:NP_001295572Link to BLAST:NP_001295572.1
Original member Current member NCBI NM_001308644.1 NP_001295573.1 Accepted alive Link to Nucleotide Sequence:NM_001308644.1Link to Protein Sequence:NP_001295573.1Re-query CCDS DB by Nucleotide ID:NM_001308644Re-query CCDS DB by Protein ID:NP_001295573Link to BLAST:NP_001295573.1
Original member Current member NCBI NM_001308645.1 NP_001295574.1 Accepted alive Link to Nucleotide Sequence:NM_001308645.1Link to Protein Sequence:NP_001295574.1Re-query CCDS DB by Nucleotide ID:NM_001308645Re-query CCDS DB by Protein ID:NP_001295574Link to BLAST:NP_001295574.1
Original member Current member NCBI NM_001308646.1 NP_001295575.1 Accepted alive Link to Nucleotide Sequence:NM_001308646.1Link to Protein Sequence:NP_001295575.1Re-query CCDS DB by Nucleotide ID:NM_001308646Re-query CCDS DB by Protein ID:NP_001295575Link to BLAST:NP_001295575.1
Original member Current member NCBI NM_001308647.2 NP_001295576.1 Accepted alive Link to Nucleotide Sequence:NM_001308647.2Link to Protein Sequence:NP_001295576.1Re-query CCDS DB by Nucleotide ID:NM_001308647Re-query CCDS DB by Protein ID:NP_001295576Link to BLAST:NP_001295576.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295570.1 301 P55088-2 301 100% 0 0
NP_001295571.1 301 P55088-2 301 100% 0 0
NP_001295572.1 301 P55088-2 301 100% 0 0
NP_001295573.1 301 P55088-2 301 100% 0 0
NP_001295574.1 301 P55088-2 301 100% 0 0
NP_001295575.1 301 P55088-2 301 100% 0 0
NP_001295576.1 301 P55088-2 301 100% 0 0

Chromosomal Locations for CCDS 89196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 15393451 15393729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 15397579 15397659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 15398091 15398255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 15399588 15399968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGTGGCTTTCAAAGGAGTCTGGACTCAGGCTTTCTGGAAGGCAGTCTCAGCAGAATTTCTGGCCACGC
TTATCTTTGTTTTGCTCGGTGTGGGATCCACCATAAACTGGGGTGGCTCAGAAAACCCCTTACCTGTGGA
CATGGTCCTCATCTCCCTTTGCTTTGGACTCAGCATTGCTACCATGGTGCAGTGCTTTGGCCACATCAGT
GGTGGCCACATCAATCCCGCTGTGACTGTAGCCATGGTGTGCACACGAAAGATCAGCATCGCTAAGTCCG
TCTTCTACATCATTGCACAGTGCCTGGGGGCCATCATTGGAGCCGGCATCCTCTACCTGGTCACACCTCC
CAGTGTGGTTGGAGGATTGGGAGTCACCACGGTTCATGGAAACCTCACCGCTGGCCATGGGCTCCTGGTG
GAGTTAATAATCACTTTCCAGTTGGTGTTCACTATTTTTGCCAGCTGTGATTCCAAACGAACTGATGTTA
CTGGTTCAATAGCTTTAGCAATTGGATTTTCCGTTGCAATTGGACATTTGTTTGCAATCAATTATACTGG
AGCCAGCATGAATCCAGCTCGATCTTTTGGACCCGCAGTTATCATGGGAAACTGGGCAAACCACTGGATA
TATTGGGTTGGACCAATCATGGGCGCTGTGCTGGCAGGTGCCCTTTATGAGTATGTCTTCTGTCCTGATG
TGGAGCTCAAACGTCGCCTTAAGGAAGCCTTCAGCAAAGCCGCGCAGCAGACAAAAGGGAGCTACATGGA
GGTGGAGGACAACCGGAGCCAAGTGGAGACGGAAGACTTGATCCTGAAGCCCGGAGTGGTGCATGTGATT
GACATTGACCGTGGAGAAGAGAAGAAGGGGAAAGACTCTTCGGGAGAGGTATTGTCTTCCGTATGA

Translation (301 aa):
MVAFKGVWTQAFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHIS
GGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLV
ELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWANHWI
YWVGPIMGAVLAGALYEYVFCPDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQVETEDLILKPGVVHVI
DIDRGEEKKGKDSSGEVLSSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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