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Report for CCDS89331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89331.1 Public Mus musculus 19 Rtn3 23 108 98 CCDS HistoryNCBI Gene:20168Re-query CCDS DB by CCDS ID:89331.1Re-query CCDS DB by GeneID:20168See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235593.1 ENSMUSP00000158024.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235593.1Link to Ensembl Protein Viewer:ENSMUSP00000158024.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235593Re-query CCDS DB by Protein ID:ENSMUSP00000158024
Original member Current member NCBI NM_001271486.1 NP_001258415.1 Accepted alive Link to Nucleotide Sequence:NM_001271486.1Link to Protein Sequence:NP_001258415.1Re-query CCDS DB by Nucleotide ID:NM_001271486Re-query CCDS DB by Protein ID:NP_001258415Link to BLAST:NP_001258415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258415.1 643 Q9ES97-5 643 100% 0 0

Chromosomal Locations for CCDS 89331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7427830 7427875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7429751 7429809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7430986 7431032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7431966 7432035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7432452 7432590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7434931 7435138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7456300 7457460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7467811 7467867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7482939 7483083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1932 nt):
ATGGCGGAGTCGTCAGCGGCCACTCAGTCCCCGTCAGTCTCCTCGTCGTCCTCCGGGGCCGAGCCGTCAG
CTCTCGGCGGCGGCGGCGGGAGCCCTGGAGCCTGCCCCGCCCTGGGGGCGAAGAGCTGCGGCTCCTCGTG
TGCGGATTCCTTTGTTTCTTCCTCTTCCTCTCAGCCTGTATCTATATTTTCGACCTCACAAGGTGACTGG
ACAGAAGCATTTACAGAAGGAAAACCTGTAAGAGACTACCTCAGTTCCACAAAAGAAGCTGGTGGCAACG
GTGTGCCAGGCAGTTCTCAGCTTCATTCTGAGCTGCCTGGCTCTATGCCTGAGAAATGGGTCTCAGGCTC
TGGAGCAGCCACAGTGGAAGTAACTTTACCTAACCTGAGGGGTGCCTGGCCTAACTCTGTGATGGGGGAA
GTCACAGAGGTTGATAGTTCTGGGGAATCTGATGACACAGTAATAGAGGACATCACAGAAAAACCTGACT
CCCTTCCAAGTGCTGCTGCAAAAACAAGTGAAAGGGAAATCAAAGAGACTCCCAGTCGTGAAACTGTGAG
GAGTGAAATGTGTGAAAACTCTGAGCAGCCGCAGGCCCAGCCAGAAACTCCTACTCAGAAGAGTCTGGAA
GGTGAGGTGGCTTCACAAGTACCTAATACCCTGAATGAAGTCACACCTGAAAAGCTTGATATGACTAACA
ACCCCAAAGTTTGCTCAGCAGCACCTCCAAGTGTTCTTAATGAGACAGGATTCTCACTAACTGTGCCAGC
TTCTGCCAAGTTGGAATCTTTGCTTGGAAAATATGTTGAAGATACAGATGGTTCCTCCCCAGAGGACTTG
ATGGCTGTCCTCACAGGAGCCGAGGAGAAGGGGATAGTGGATAAAGAGGAAGGTGATGTTTTGGAAGCAG
TGTTAGAGAAGATAGCAGACTTTAAAAACACTTTGCCTGTGGAACTCTTGCATGAAAGTGAGCTAAGTGG
TTCTGAAACCAAAAATATTAAAAGCAAATACAGTGAAGACAGCAGAGAAACAACTGGAGGTGCCCCTACG
ATGTCTCCCGACTTAGAGCAGGAGCAGCTCACCATCAGAGCCATTAAAGAATTAGGAGAAAGGCAAGCTG
AGAAGGTGCAGGATGAAGGAATATCTTCTGGAGGAAAACTCAAGCAAACCTTTGCTCCACAGTCTGGGCC
ACAGAGTTCATCTGACATCCTAGAACACACAGATGTCAAAACTGGATCTGATCTTGGAATTCCCAAAAAT
CCTACTATCATCAAAAACACTAGAATAGATTCTATTTCCAGCCTTACCAAGACTGAAATGGTTAACAAGA
ATGTTCTAGCAAGACTTCTCAGTGATTTCCCAGTGCACGATCTGATTTTCTGGCGAGATGTGAAGAAGAC
TGGGTTTGTCTTTGGCACCACACTGATCATGCTGCTCTCTCTGGCAGCCTTCAGTGTTATCAGTGTGGTC
TCTTACCTCATCCTGGCTCTTCTCTCTGTCACCATCAGCTTCAGAGTCTATAAGTCTGTCATTCAAGCTG
TGCAGAAGTCAGAAGAAGGACATCCATTCAAGGCCTACTTGGATGTGGACATTACCCTGTCTTCAGAAGC
TTTCCACAACTACATGAATGCTGCGATGGTGCATGTCAACAAGGCCCTCAAACTCATTATTCGTCTCTTT
CTGGTAGAAGACTTGGTTGACTCCTTGAAGCTGGCTGTCTTCATGTGGCTGATGACCTATGTTGGTGCTG
TTTTTAATGGAATTACCCTTCTGATTCTCGCCGAGCTGCTTGTCTTCAGCGTCCCAATTGTCTATGAGAA
GTATAAGACACAGATTGACCACTATGTTGGGATTGCCCGGGATCAGACCAAGTCAATTGTTGAAAAGATC
CAAGCAAAGCTTCCTGGAATCGCCAAAAAAAAGGCAGAATAA

Translation (643 aa):
MAESSAATQSPSVSSSSSGAEPSALGGGGGSPGACPALGAKSCGSSCADSFVSSSSSQPVSIFSTSQGDW
TEAFTEGKPVRDYLSSTKEAGGNGVPGSSQLHSELPGSMPEKWVSGSGAATVEVTLPNLRGAWPNSVMGE
VTEVDSSGESDDTVIEDITEKPDSLPSAAAKTSEREIKETPSRETVRSEMCENSEQPQAQPETPTQKSLE
GEVASQVPNTLNEVTPEKLDMTNNPKVCSAAPPSVLNETGFSLTVPASAKLESLLGKYVEDTDGSSPEDL
MAVLTGAEEKGIVDKEEGDVLEAVLEKIADFKNTLPVELLHESELSGSETKNIKSKYSEDSRETTGGAPT
MSPDLEQEQLTIRAIKELGERQAEKVQDEGISSGGKLKQTFAPQSGPQSSSDILEHTDVKTGSDLGIPKN
PTIIKNTRIDSISSLTKTEMVNKNVLARLLSDFPVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVV
SYLILALLSVTISFRVYKSVIQAVQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHVNKALKLIIRLF
LVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKI
QAKLPGIAKKKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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