NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS89341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89341.1 Public Mus musculus 19 Syt7 23 108 98 CCDS HistoryNCBI Gene:54525Re-query CCDS DB by CCDS ID:89341.1Re-query CCDS DB by GeneID:54525See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076968.10 ENSMUSP00000076234.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076968.10Link to Ensembl Protein Viewer:ENSMUSP00000076234.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076968Re-query CCDS DB by Protein ID:ENSMUSP00000076234
Current member NCBI NM_001373944.1 NP_001360873.1 Accepted alive Link to Nucleotide Sequence:NM_001373944.1Link to Protein Sequence:NP_001360873.1Re-query CCDS DB by Nucleotide ID:NM_001373944Re-query CCDS DB by Protein ID:NP_001360873Link to BLAST:NP_001360873.1

Chromosomal Locations for CCDS 89341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10389483 10389513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10413340 10413443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10417963 10418042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10421757 10421888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10426299 10426667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10430338 10430460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10435550 10435685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10439152 10439422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10442828 10442997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10443377 10443491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10443985 10444184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10448340 10448444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGTACCGGGACCCGGAGGCGGCCAGCCCAGGGGCACCTACCCGCGATGTCCTGCTGGTCTCTGCAATCA
TCACCGTCAGCCTTAGCGTCACTATCGTCCTCTGCGGCCTGTGCCACTGGTGTCAGCGCAAACTGGGCAA
ACGCTACAAGAATTCCTTGGAGACGGTGGGCACGCCAGACTCGGGGCGTGGGCGCGGTGAGAAGAAAGCC
ATCAACGACCTAGACAGAGACTTTTGGAATAACAATGAAAGCACAGTGCAGCAGAAATGGAGTTCCTATC
CTCCCAAGGAGTTTATTCTAAACATTTCACCCTACGCCCCTTATGGCGACCCTCGACTGTCCCTCAATTT
CGAGGACTCCACCCTGTCCACGGCCACTACCCTTGAGTCTATCCCCAGCTCCGCGGGAGAGCCGAAATGC
CAGCGACCCCGCACACTGATGCGGCAGCAGAGCCTGCAGCAGCCGCTGAGCCAGAACCAGCAGGGCCGGC
AGCCCAGTCAGCCCACCACCAGCCAGAGCCTGGGCCAGCTGCAGGCCCACGCGGCCTCGGCACCGGGCTC
CAACCCCCGGGCCTATGGTCGGGGTCAGGCTCGGCAGGGCACCTCGGCCGGCTCCAAGTACCGGGCAGCT
GGGGGCCGCAGCCGCTCCAACCCAGGCAGCTGGGACCACGTGGTGGGGCAGATTCGAAACCGAGGCTTGG
ACATGAAATCCTTCCTGGAAGGCCGGATGGTGGTGCTATCCCTGGTATTAGGGCTTTCGGAACAGGATGA
CTTTGCCAATATCCCTGACCTGCAAAACCCAGGAACCCAGCAGAACCAGAACGCTCAGGGGGACAAGAGG
TTGCCTGCAGGAGGGAAGGCTGTGAATACAGCCCCAGTGCCCGGCCAGACGCCACACGATGAGTCTGACC
GCAGAACGGAGACCCGTTCCTCTGTCTCGGACCTCGTCAACTCCCTTACCAGCGAGATGCTCATGCTCTC
CCCGGGTTCTGAGGAGGATGAGGCCCACGAGGGCTGCAGCCGAGAGAACCTGGGCCGAATCCAGTTCAGT
GTTGGCTACAACTTCCAAGAGTCCACACTCACCGTGAAGGTCATGAAGGCCCAAGAGCTGCCAGCCAAGG
ACTTCAGCGGTACTAGTGACCCCTTTGTCAAGATCTACCTGCTACCCGACAAGAAGCACAAACTGGAGAC
CAAGGTGAAGCGGAAGAATCTAAACCCGCACTGGAATGAGACCTTTCTATTTGAAGGGTTTCCCTACGAG
AAAGTGGTGCAGAGGGTCCTCTACCTCCAGGTCCTGGATTATGACCGTTTCAGCCGCAATGACCCCATTG
GGGAGGTGTCCATCCCTCTGAACAAGGTGGACCTGACCCAGATGCAGACCTTCTGGAAGGATCTGAAGCC
ATGCAGCGATGGGAGTGGGAGCCGAGGGGAGCTGCTCTTGTCCCTCTGCTACAACCCCTCTGCCAACTCC
ATCATCGTGAACATCATCAAAGCTCGAAACCTCAAAGCCATGGACATCGGGGGCACATCAGACCCCTATG
TGAAGGTGTGGCTGATGTATAAAGACAAGCGGGTAGAGAAAAAGAAGACCGTGACAAAGAAGAGGAACCT
GAACCCCATCTTCAATGAGTCTTTCGCCTTCGACATACCCACGGAGAAGCTGAGGGAGACCACGATCATC
ATCACTGTCATGGACAAAGACAAGCTCAGCCGCAACGACGTCATCGGCAAGATCTACCTGTCCTGGAAGA
GCGGACCAGGTGAAGTGAAACACTGGAAGGACATGATCGCTCGTCCCCGGCAGCCTGTGGCCCAGTGGCA
CCAGCTGAAAGCCTGA

Translation (611 aa):
MYRDPEAASPGAPTRDVLLVSAIITVSLSVTIVLCGLCHWCQRKLGKRYKNSLETVGTPDSGRGRGEKKA
INDLDRDFWNNNESTVQQKWSSYPPKEFILNISPYAPYGDPRLSLNFEDSTLSTATTLESIPSSAGEPKC
QRPRTLMRQQSLQQPLSQNQQGRQPSQPTTSQSLGQLQAHAASAPGSNPRAYGRGQARQGTSAGSKYRAA
GGRSRSNPGSWDHVVGQIRNRGLDMKSFLEGRMVVLSLVLGLSEQDDFANIPDLQNPGTQQNQNAQGDKR
LPAGGKAVNTAPVPGQTPHDESDRRTETRSSVSDLVNSLTSEMLMLSPGSEEDEAHEGCSRENLGRIQFS
VGYNFQESTLTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYE
KVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSDGSGSRGELLLSLCYNPSANS
IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTII
ITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH