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Report for CCDS89345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89345.1 Public Mus musculus 19 Vps37c 23 108 98 CCDS HistoryNCBI Gene:107305Re-query CCDS DB by CCDS ID:89345.1Re-query CCDS DB by GeneID:107305See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235921.1 ENSMUSP00000158200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235921.1Link to Ensembl Protein Viewer:ENSMUSP00000158200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235921Re-query CCDS DB by Protein ID:ENSMUSP00000158200
Original member Current member NCBI NM_001361960.1 NP_001348889.1 Accepted alive Link to Nucleotide Sequence:NM_001361960.1Link to Protein Sequence:NP_001348889.1Re-query CCDS DB by Nucleotide ID:NM_001361960Re-query CCDS DB by Protein ID:NP_001348889Link to BLAST:NP_001348889.1

Chromosomal Locations for CCDS 89345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10706216 10706308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10710270 10710441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10711271 10711353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10712595 10712738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGGAGGGGCTGAAAGACAAGACCCTGCAGGAGCTGGAGGAAATGCAGAATGACCCAGAAGCCATTGCCC
GGCTAGCCTTGGAGTCTCCTGAGGTTCAGGACCTGCAGTTAGAACGAGAGATGGCACTGGCCACGAACCG
GAGCCTGGCAGAGCAGAACCTGGAGTTCCAAGGTCCCCTGGAAATCAGCCGCTCTAACCTCTCAGACAAA
TACCAGGAGCTGCGGAAGCTTGTGGAGCGGTGCCAGGAGCAGAAAGCCAAGCTGGAGAAATTTTCCTCGG
CACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGGA
CACTGCTGCACCTGCGTCGAGTCCGCGTAGAGAAGCTCCAGGACGTGGTGAGGCGGCCTCGAGCTTTGCC
GGAGCTGGCTGGAGATGTCCCTCCAAAGCGCCCGCCACCCCCACGCCCAGTACCCCAGGCGACACCGCCT
GA

Translation (163 aa):
MEGLKDKTLQELEEMQNDPEAIARLALESPEVQDLQLEREMALATNRSLAEQNLEFQGPLEISRSNLSDK
YQELRKLVERCQEQKAKLEKFSSALQPGTLLDLLQIEGMKIEEESEDTAAPASSPRREAPGRGEAASSFA
GAGWRCPSKAPATPTPSTPGDTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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