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Report for CCDS89392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89392.1 Public Mus musculus 19 Lcor 23 108 98 CCDS HistoryNCBI Gene:212391Re-query CCDS DB by CCDS ID:89392.1Re-query CCDS DB by GeneID:212391See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238398.1 ENSMUSP00000158715.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238398.1Link to Ensembl Protein Viewer:ENSMUSP00000158715.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238398Re-query CCDS DB by Protein ID:ENSMUSP00000158715
Original member Current member NCBI NM_001370767.1 NP_001357696.1 Accepted alive Link to Nucleotide Sequence:NM_001370767.1Link to Protein Sequence:NP_001357696.1Re-query CCDS DB by Nucleotide ID:NM_001370767Re-query CCDS DB by Protein ID:NP_001357696Link to BLAST:NP_001357696.1

Chromosomal Locations for CCDS 89392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41552499 41552736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41555608 41555701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41581778 41586536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5091 nt):
ATGCAGCGAATGATCCAACAATTTGCTGCTGAATATACCTCAAAAACTAGCTCTACTCAGGACCCCAGCC
AGCCCAATAGCACAAAGAACCAAAGCCTGCCGAAAGCATCTCCAGTCACCACCTCTCCCACGGCTGCAAC
TACTCAGAACCCCGTGCTCAGCAAACTGCTCATGGCTGACCAAGACTCACCTCTGGACCTTACTGTCAGA
AAGTCTCAGTCAGAACCTAGTGAACAAGACGGTGTACTTGACTTATCTACTAAGAAAAGTCCATGTGCTA
GCAGCACTTCCCTGAGCCATTCTCCAGGCTGCTCCAGTACTCAAGGGAACGGAGAGGAGTCAGCAGAGGC
ACCCGTAGCTGATCCTAACCGTCAATCAAAGTCTCCACTGGAGAAGTTTATGGTCAAGTTGTGCAATCAT
CATCAGAAGCAATTCATCCGCGTCCTGAGTGACCTGTACACCGAGTCCCAGCCAGGTTCTGAGGCCCTGC
AGCCTCTGGATTCCACCGTGATGGACGTCTCCGCTTGCGATTCGGGCTGTGCCCAGCTGAGCGGCAGAGA
GAATGAAAAGGATGATTGTCTCGAGGAGAGTTCTCCTGCCTCTGTAAAGTTGTTCTTAGACTCATCCGGT
TCTCCTAGCTCCCTGAATGTGACTGAAGAAACCATGAAGGAACCACCTCCTGAGACAGACTCTGTAGATG
GGAGAGACAGTGCCGCGAGCTCGAGCGCTGTCCAGAAAGGTTCCTCTGAACCTCCAGACGCTCAGCATAA
CCCCACAGGTTCTGCAGACAGTTCCACCATGGGATGCCTCGGTACACTGGACGCTTTCTCTTCTAACTCT
CCCCACAGTGCTAAAAGCTTAGAGGGGCAAACCACTGGCCAGGAGCAAGACACAGACATGAAACCCTGTG
AGGATGCTGAAGACAGTGCCCCAGCGCCAGTCCAAAGTCTGGCTGCAGTGGAAGAGGTGGCTGAGAATAC
TGAAGAGGGTGGTAGCTGTATTGTGTCTCAAAGAAACTCATTCAAAGCTTTATCAGAAGAGACGTGGGAC
TCAGGGTTTATGGGAAACTCATCTAGTACTGCAGACAAAGAGAATGCTTTACAGTCTAGCTCAAAATCAT
CCTTCCACCAGGATTTAGAGACAGATGAGCAAGATGCAAGGCCAAAGCAAGAGAACCATCTTCATTCATT
AGGTAGAAACAAGGTAGGTTTCCAGACATATCCCAGAGACAAGGGCCATTTTGATCATTCCAGAGGTGGT
TGGTTAGCTCCCAGCCCCACGCCAACTGTACACAGAGCATCCAATGGTCACTCACAAACCAAGATGATGT
CAGCCTCCATCAAGACTGCTCGGAAAAGTAAGAGGGCATCAGGGTTGAGGATAAACGATTATGACAACCA
GTGTGATGTTGTTTATATCAGCCAACCAATAACAGAATGCCACTTTGAGAATCAAAGATCCATACTGTCT
TCTCGGAAAACAGCCCGAAAGAGTACCCGGGGATATTTCTTCAATGGTGACTGCTGTGAGCTGCCAACTG
TTCGCACACTGGCCAGAAATTTATGCTCCCAAGACAAAGGAAGCTGCTCACAAGTAGCATCAGAGGCAGT
GATGACTCCCAAGCAGACTCTTACAGTTCCCACCTCAAAGCACACAGTAGGTGTGCAGCTTCCCACAGTA
GGTGCACAACTTCCTACAACAGATGTACAGCCTCCCACAGCAGGTACACAACTTCCTACAGCAGATGTGC
AGTCCCCCACAGTAGGTGCACAACTTCCTACAGCAGATGTGCAGTCCCCCACAGTAGGTGCACAACTTCC
TACAGCAGATGTGCAGCCTCCCACAGTAGATGTACAACTTCCTACAGCAGATGTGCAGCCTCCCACAGGA
GGTGTACAACTTCCTACAGCAGATGTGCAGCCTCCCACAGTAGGTGCACAACTTCCTAGAGTAGATGTCC
AGCTTTCCTCAGTAGGTACACAACTTCCTACAGCAGATGTGCAGCCTCCCACAGTAGGTGCACAACTTCC
TGCAGCGGATGTACAACTTCCCACAGTGGATGTGCAGATTTCCACAGTTGATACGCAGCTTTCCACAGTA
GGTGAGCAGCCTCTAGAAGATATCTGTGACGATCCTAGGAAAGAGAGAACCTCCCTTGAGGGAGGGGACG
AAGACACATCCTCAGCGAAAAAGCATCAGGAGGCAGAGGTTTGCCTCAGCTTGAGGGAACAGGATCCTAG
TAGCTCCCCTAGGCCGGGAGAGACCACAACCTCTAGCCCAGCATGCCTCCTGCCTACTCTCCTCCCTAAT
GACAATATGTCTGAGGTGCCAGAAGGCAGCATTGTGGTCTCACCTCCCACAGAAAGTGTACTGTCTTTCC
AGGAGCAAGACCAGCCACCAGCCTCTCAGCTAGGTCCAGAGGAAATGCAGGCACAGGAGTGCCACTTGGT
TCCGACAGCTGGAAGCACCCCCTTTACCTCCCGAGAGGACAGTGAAGACCTCCTCTGTAGACCTCAGTCT
TCTCCTAAAACATCCATCAGAGAGGAGAGCTCTCCATGCTCGGAAGATGAAGGTTCCACTGTGGCTTTAG
ATCCCCCCCTGGGCCTAGAACTGTCTGAACATGACCAAAGCACCAGCACTGAGGCGGAGACCAGAGACAT
CCCCGGGGAGACACTGTTGCTAGATGACTCCCTGCCCCTCCTGGAGAGCAGCATTGTCACTGATGAGAAC
CCAAGCGAGATGGAAGAAGGTGAGGCCACAAGTGGAACAGGACACCTGGAGGCGCATGACAATGATACAA
AATACTCAGCAGAAAATGATCCCAGTGAGCCAAACTCCGACTCACCTGAAGAGAATGTGGATAAGAAGAA
AAAGGCTAGAAAGTTCCCCGAGGCCTCTGATAGGTGCCTAAGAAGTCAGCTTGGAGATCCTTCCTCTTCT
GACAGGTACCCAGGAAGCCAGGGTTTGGATTCATCCGCTGCTTGCTCTGAAATCAAGGTTTCTAAAAATC
CTGCTGTAAAGCATTCTAAAAGAGAAGGGGACTCTGGTAGGGTGACATCCGAGGGACCAGTGATTGACAG
CATCCATCCAGACAATCTGGAAGACCCTGAAGACTCTGGTGTTAGTGAGCATTCCTCTGATGAAGAGACC
AAGCAGGAGACTGAAGGAGTTGGTGTCATTACAAGGCAGACTGTTAAAAATATGCTGGCAAAGGAAATTA
AAAGGGAAGAGGGAGGGACTTACCCAAACAGTGACCCAGCCACTGTTGGCCAGCCATTGCCTGGGGACAA
TCTGGAAACCCATGTCTGGTCCAAGATAGATGAGAGAGATGCCCATGTGCCCTCAGAAAGCATTCCTTGC
AAGAGGGATCCAGAGCAGGTAAAAGAGAACCCGGGACACCTTGCCATACAGGACACAGAGGCTGCCGCTA
TGAGTGAGGTAGACCCTGAGGATACCCACCATAAAGATGATGCTGGCCTCGCTCCATGTAGCTCATCTGG
GATATCAGCCAGTCATAGTGACGGTGCTGATGGGCCACCAAAATCAGTAACAAGGCCTAAGAGACTGCCT
TCTTCTACCTACAACCTGAGACATGCTCATTGTTCGAATGCCTTGGACACTGCAAAAATGACTTCAGAAA
AGCAAGGCACACAGGTAAACCCAGCAGCCAAGGAAGGCGGAGCTTCCGAGAGTGCAGAGCCCTTAGATGA
GGAAGATGAGGACTCGGTGGTGGAGGAGCAGCCCAAGTTCATAGGATGGTGTGCAGAGGAGGAGAACCAG
GAGCTGATCGCCAGCTTCAACGCCCACTACCTGCGGGTCCAGAAGGGCTGGATCCAGTTGGAGAAGGAAG
CTCAGCCAACGGCAAGAGCAAGGAGCAAGTCTGACAAGCTGAAGGAGATTTGGAAGAGCAAGAAGCGGGC
ACGGAAGTGTAGGGGGTCGTTGGAGGTGCAAAAGTTTTCTCCCGTTCAGATGCTGTTTATGACCAACTTT
AAGCTGTCTAACATCTGTAAGTGGTTCTTAGAGACAACAGAAACTCGATCTCTGGTCATTGTGAAGAAAC
TCAATACTCGTCTTCCAGGAGACATCCCCCTTGTTAAACACCCTCTTCAGAAGTTTCCTCCTTCCACCAT
GTACCCTAGTTCACTACAGGCAGAACGCTTGAAAAAACATTTAAAGAAATTCCCTGGAGCCATTCCTGCT
AGGAATAATTGGAAGACACAGAAGCTATGGGCTAAACTACGAGAGAATCCTGACCTGATAGAGTCAGAGG
ATGGCAGTGACATCAGCTTTGGCCCTAGCAGTGAAGACAGCGTGGAGGAAGTCAGGGAAGGCAGACATAG
CCATCCTCCCACCAACTTGCCTACTCCAGCCAGCACCCGGATCCTTAGAAAGTATTCCAATATTCGAGGA
AAGCTCAGAGCACAGCGCCTGGACAGCTCACTGTGTGGGGCTTCTGAAATGAAGCAGGGCCGCAAGAGCG
TGTGCATTAACCCGCTCATGTCCCCAAAGCTCGCCCTCCAGGTGGGTGCAGATGGGTTTCCCGTCAACCC
CAAGAGGGCTGAAAGAAGCAAGGGGAGAAGAGGGAAGCAGATGCCGGAAACTTTGCTTAAAGTGGAAGGT
CAGAACAAGCGCAAGAGAGCAGAAGGCTCTGGTACTCAAGATGGTAAGGACAAGGGGCCGGCAACAAAAG
TCAGCAGAGGCCTTTCTGCCAAGAAGCTAGCTGCAAAGGACAGAGCCAACCAACTCTCCAAGAAGATGAC
CTTGAAAGCGAATAAAGTGAGAGTCTGTAGAAAGGGTCCTGGAAGGAGCTGCCTGTCATCCAGGAAAGAA
AAAGAGAATGCCAACAGAAGACCTGGCCATCCTGCGGCAGCCTCCGAAGCGCTGACAAAGCCTTCAAAAC
AAAGGGGCGCAAGAGAAGCCTCTTCAAAGCCCCCAAAAGTGAGGAGGAGAAACCGGAAGCTGAGCAGTGG
TAGGGGCCATGCCAGACCCTTAGCAAAAAGCCCAGAGAACCGGACTGCCCCAAGAAAAAGAAAGCTCAAG
GCCAAACTGGACTCTTCCCAGGGCAAACGGAGGCGGTTAGAAGCCAAGTGA

Translation (1696 aa):
MQRMIQQFAAEYTSKTSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVR
KSQSEPSEQDGVLDLSTKKSPCASSTSLSHSPGCSSTQGNGEESAEAPVADPNRQSKSPLEKFMVKLCNH
HQKQFIRVLSDLYTESQPGSEALQPLDSTVMDVSACDSGCAQLSGRENEKDDCLEESSPASVKLFLDSSG
SPSSLNVTEETMKEPPPETDSVDGRDSAASSSAVQKGSSEPPDAQHNPTGSADSSTMGCLGTLDAFSSNS
PHSAKSLEGQTTGQEQDTDMKPCEDAEDSAPAPVQSLAAVEEVAENTEEGGSCIVSQRNSFKALSEETWD
SGFMGNSSSTADKENALQSSSKSSFHQDLETDEQDARPKQENHLHSLGRNKVGFQTYPRDKGHFDHSRGG
WLAPSPTPTVHRASNGHSQTKMMSASIKTARKSKRASGLRINDYDNQCDVVYISQPITECHFENQRSILS
SRKTARKSTRGYFFNGDCCELPTVRTLARNLCSQDKGSCSQVASEAVMTPKQTLTVPTSKHTVGVQLPTV
GAQLPTTDVQPPTAGTQLPTADVQSPTVGAQLPTADVQSPTVGAQLPTADVQPPTVDVQLPTADVQPPTG
GVQLPTADVQPPTVGAQLPRVDVQLSSVGTQLPTADVQPPTVGAQLPAADVQLPTVDVQISTVDTQLSTV
GEQPLEDICDDPRKERTSLEGGDEDTSSAKKHQEAEVCLSLREQDPSSSPRPGETTTSSPACLLPTLLPN
DNMSEVPEGSIVVSPPTESVLSFQEQDQPPASQLGPEEMQAQECHLVPTAGSTPFTSREDSEDLLCRPQS
SPKTSIREESSPCSEDEGSTVALDPPLGLELSEHDQSTSTEAETRDIPGETLLLDDSLPLLESSIVTDEN
PSEMEEGEATSGTGHLEAHDNDTKYSAENDPSEPNSDSPEENVDKKKKARKFPEASDRCLRSQLGDPSSS
DRYPGSQGLDSSAACSEIKVSKNPAVKHSKREGDSGRVTSEGPVIDSIHPDNLEDPEDSGVSEHSSDEET
KQETEGVGVITRQTVKNMLAKEIKREEGGTYPNSDPATVGQPLPGDNLETHVWSKIDERDAHVPSESIPC
KRDPEQVKENPGHLAIQDTEAAAMSEVDPEDTHHKDDAGLAPCSSSGISASHSDGADGPPKSVTRPKRLP
SSTYNLRHAHCSNALDTAKMTSEKQGTQVNPAAKEGGASESAEPLDEEDEDSVVEEQPKFIGWCAEEENQ
ELIASFNAHYLRVQKGWIQLEKEAQPTARARSKSDKLKEIWKSKKRARKCRGSLEVQKFSPVQMLFMTNF
KLSNICKWFLETTETRSLVIVKKLNTRLPGDIPLVKHPLQKFPPSTMYPSSLQAERLKKHLKKFPGAIPA
RNNWKTQKLWAKLRENPDLIESEDGSDISFGPSSEDSVEEVREGRHSHPPTNLPTPASTRILRKYSNIRG
KLRAQRLDSSLCGASEMKQGRKSVCINPLMSPKLALQVGADGFPVNPKRAERSKGRRGKQMPETLLKVEG
QNKRKRAEGSGTQDGKDKGPATKVSRGLSAKKLAAKDRANQLSKKMTLKANKVRVCRKGPGRSCLSSRKE
KENANRRPGHPAAASEALTKPSKQRGAREASSKPPKVRRRNRKLSSGRGHARPLAKSPENRTAPRKRKLK
AKLDSSQGKRRRLEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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