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Report for CCDS89538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89538.1 Public Mus musculus 2 Bmf 23 108 98 CCDS HistoryNCBI Gene:171543Re-query CCDS DB by CCDS ID:89538.1Re-query CCDS DB by GeneID:171543See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000125860.2 ENSMUSP00000159051.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125860.2Link to Ensembl Protein Viewer:ENSMUSP00000159051.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125860Re-query CCDS DB by Protein ID:ENSMUSP00000159051
Original member NCBI NM_001331221.1 NP_001318150.1 Updated not alive Link to Nucleotide Sequence:NM_001331221.1Link to Protein Sequence:NP_001318150.1Re-query CCDS DB by Nucleotide ID:NM_001331221Re-query CCDS DB by Protein ID:NP_001318150
Current member NCBI NM_001331221.2 NP_001318150.1 Accepted alive Link to Nucleotide Sequence:NM_001331221.2Link to Protein Sequence:NP_001318150.1Re-query CCDS DB by Nucleotide ID:NM_001331221Re-query CCDS DB by Protein ID:NP_001318150Link to BLAST:NP_001318150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001318150.1 185 Q91ZE9 185 100% 0 0

Chromosomal Locations for CCDS 89538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 118532558 118532659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118545082 118545245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 118546716 118547007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGAGCCACCTCAGTGTGTGGAGGAGCTAGAAGATGATGTGTTCCAGTCAGAGGATGGGGAGCCAGGGA
CACAGCCTGGGGGCTTGCTCTCTGCTGACCTGTTTGCCCAGAGCCAGCTGGACTGTCCCCTCAGTCGACT
CCAGCTCTTCCCTCTCACCCATTGCTGTGGTCCCGGACTCCGGCCCATAAGCCAGGAAGACAAGGCCACT
CAGACCCTCAGTCCAGCTTCCCCAAGCCAGGGTGTCATGCTGCCTTGTGGGGTGACAGAGGAACCCCAGA
GACTCTTTTACGGCAACGCTGGCTACAGGCTTCCTCTCCCTGCCAGTTTCCCTGCAGGCTCACCCCTTGG
GGAGCAGCCCCCTGAAGGACAGTTCCTTCAGCACCGAGCAGAGGTGCAGATCGCCAGAAAGCTTCAGTGT
ATTGCAGACCAGTTCCATCGGCTTCATACGCAACAACACCAGCAGAACCGAGACCGTGCGTGGTGGCAGG
TCTTCCTTTTCCTTCAAAACCTCGCCCTGAACAGACAAGAAAACAGGGAAGGGGTGGGGCCCTGGTGA

Translation (185 aa):
MEPPQCVEELEDDVFQSEDGEPGTQPGGLLSADLFAQSQLDCPLSRLQLFPLTHCCGPGLRPISQEDKAT
QTLSPASPSQGVMLPCGVTEEPQRLFYGNAGYRLPLPASFPAGSPLGEQPPEGQFLQHRAEVQIARKLQC
IADQFHRLHTQQHQQNRDRAWWQVFLFLQNLALNRQENREGVGPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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