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Report for CCDS89562.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89562.1 Public Mus musculus 2 Cfap61 23 108 98 CCDS HistoryNCBI Gene:78774Re-query CCDS DB by CCDS ID:89562.1Re-query CCDS DB by GeneID:78774See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89562.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000133433.7 ENSMUSP00000118411.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133433.7Link to Ensembl Protein Viewer:ENSMUSP00000118411.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133433Re-query CCDS DB by Protein ID:ENSMUSP00000118411
Original member Current member NCBI NM_001369121.1 NP_001356050.1 Accepted alive Link to Nucleotide Sequence:NM_001369121.1Link to Protein Sequence:NP_001356050.1Re-query CCDS DB by Nucleotide ID:NM_001369121Re-query CCDS DB by Protein ID:NP_001356050Link to BLAST:NP_001356050.1

Chromosomal Locations for CCDS 89562.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 145939849 145939991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145947046 145947196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145949919 145949995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145950759 145950826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145951058 145951184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145963298 145963430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 145973472 145973631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146001855 146001919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146008868 146008951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146012078 146012253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146014300 146014339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146017318 146017457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146035187 146035313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146036817 146036894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146042453 146042659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146045413 146045547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146077261 146077388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146095624 146095722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146101953 146102121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146109907 146110081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146128954 146129246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146143013 146143340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146145384 146145475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146153712 146153917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146200710 146200800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 146214595 146214795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3693 nt):
ATGTCCATCCTCACGTCCCCCAGAGGGAAGGTCGAGGTGGTACACTGCCGAAGAACAGAGTCCCAGGACA
TCTTCTGTATCAAAAACCTCGTTAGAAAGTTTACTCAGAAGCTGTTTGGGAGGCTCAACATAATCTATTT
GCTAGAAAAGGCAAACCTCGCTGTTACTGTCTGCAATGACAAGGAGGAGATCATGGCTCACTCCATCTTC
TTGGACTATCCCAACTGGAACGTCGCCAAGCAGGACAACTGGATCCCATTGTTCAGGGAACTCGACAAAG
AAATCCCATGCACACCTCTGAACACGCTGTTTATGCACTTCTTTGTGGCTGTGGATGAATATGCCACTGG
CTGCCTCAAAGAAATCATCCGGACTGTGTTCAAGGCGGTGCCAGAACTGTACTTCATATTCCTTATAGTG
CCAACATATTTGAGCCTAGGCTCAACTCTGATAACTGTGTTTGACCAAGTGGGGAACATTCCATGTCTGA
ACTATAATGAAGACTTTGCAGTGCACATATGTCACAGGCACAATCACTACCCTCAGCTGCATATTCGCAA
AGCCAGGGTAGAAGACCATGATGATCTCATGCCAATATTTATGCACTACGACAACACTCTAAAGGAAATT
TATGGTGAATACTTCTTGGCCGAACTGATCGAGGCCCAAGATAAAGACCATCATGCTGTGGTGTGTGAGG
TGGAAGGCAAGGCTGTCGGGTTCATGAGCGTGTGCACCAGCGTGAACTTGCCCCTGCTACACGAATGCTT
TGACCTGGGCCCTTTCCATGGATTCTGCACCCCACATCCTGATGATATTCTGAAACCATCGCGTGAACCA
AGTCTTGAAGAAGGTGAAGATGCTGAAAGCCAAGGTTCTCCCAAGGTAGTGGAGGAGCAAGAAATGGCCC
CAGAAATAACCCAGGAGAAAGAGACCGAAACATCGGCTTCATGTGAGGAAGCCCTGCCAACAGTCTTAGG
TCTAGTCTCTGAGGAAAGGCTTAAGCAGGACATGGAAAAGAATCTAAGCATCCTTTCCTTAGTTGACGAA
GAAGATGTTGCCAGCAGCCTGAGCTCCTCCCTCCTGTTGTCTGTGGAATCCTCCCACTTCCGCCCCCTCT
ACCTGGGAGACCCTATTGCGTTTTGTATTCAGCTCTTTTGTATTGATGAGAGATACGAGGCAAGGTCGCT
GGATTTCATGAGTTTTGTTTTCAGTCTTTTTCCTGGTAAGAACTTCTGCTTGATATCTGTGCCCCATCTC
ACGCCTGAGTTTGTCCTCATCCAGAACTTTGTGAAGGTCGTCCCATTCAACAATTGCACCCTGGACCACG
ACCTCTACGTGTTCCATCGGGCTGGGCTGCTCAGGTCCATTACGATAAGATTAGCCAAGTTTCTGGATAC
TGCTGGTGTTGAAAAGCTTGTCAGCACCCTCCTGCTGAGTACAAAGATACTGGATGATTTAGCCCAGTAC
AACGAGGCTGGCAGAGACCCTGATGGAACAGCACTGCAGGTGTTCGTAGCGGAAGTTGCAGATCAAATAG
TTGGCATTGCAGTGATCAGAAAAGAAATGGATATAGAGTACATACGATCTCATTATAACATTGAGGACTT
CATCTACTTCAGCCACCACCAGCAGGAAGAACATGGGCGCTTGAACCATTTTGCCCTGAACCCCATTTTC
CGACACTACACCAAGTTTTTCCTAAAGGAGATCCTCCGCTTAGGCTATAAGTCATGTCTCTACTATCCTG
TGTACCCCCAGACCCGGGAAGGCAAGCTCCAGAGCTCTTACTCCCACTCCCTGACATCTGCCCTTCATTA
CTTGGTTCCCGTGCGACCACGACGACAGATTGTCTATCCTCTGGAAAAGCTTGGCATAAACGCTCCATCA
AAGGAGGTCTCCAAGGATCAGGTGAGTTTCGCCTTGAACCACACCAACAGAAAACTAACATTAGAACCGA
AAGTCACTGTCAATGCCAGAATTGTTGTGGTCGGTGCGTCCAGTGTTGGGATTTCATTCCTAGAGACACT
GGTGTTTTGCTCTCACCTGAAATTTAATAATCTCACCCTGATTTCAACTCATGGACTCCCAGGAAAAAGA
CTTTTGCACAACGAACAGAGGAAGTTTCTAGCAAGCGACCACTGTTTTAATGATAAGGATTATGCACTGA
TGTCACTGTGCTCCTGGGTGAACGTTGTGGTTGGTCGAATGACGGCCATAGACCGAGCAGCCAAGCAGGT
TGTGGTTTCCAAGAGTGAGATCGTGTTCTACGACCACCTCATTCTCTGTACCGGGCTGCAGTACCAGGTT
CCGTGCCCCACAGGGGCTGATACTGAGCAGCACCTGACGAACAGAGAGGTTTTGGAGCTCAGCAAGCAGC
GGTACACCGGCACTGTTCCTTCCAACCTGTTCATTCTCAACGACGAGGAAGACTGCGTTAGGATGCTCTG
TTGGCTGAGAAACAGCTCCATCCTCACAGAAGGGAAGGTCATTGTCTACGGGAATACACTCGACGCTTAC
ACAACAGTGGAGACACTCCTCAACATTGGCATGAAGGGGAGCGGCATCTACTTTGTGCATCCCCCAACTG
AATCAAACATAACCTGTATCAACAACAATGATGTAGAGAGTGCCGTGGAAGATGCACTCAGTGCCGCTGG
GGTGACAGTCTTTCATGACGCCTTGTTGGCTCAGTGGAACCATGGCCAGCACCCGGATCCTATCTACAAT
GCCTGCTTCACCACCTCCACCAAGCCTATCAGACTGGAGTGTTCAGCGTTCTTCAGCTTCTACAAGAAGA
ATGTGGATTACGAAACATTTAAAGCATTTAATGATGCATGCCTTGTCTATGATGGCCGACTTGTGATCGA
TACTACCTTCCACACCAATGACATAGCCATCAGAGCTGCTGGTTCCCTCACCAAATTCTCCAACCGATAT
TACTCAAATGAGTGGACTCACAGCAATTTCAGTTCCAAAGAAATTGGCTTCCAGCTGGCTGCAGCTATGC
TCAGTCTCTTTGACCCAACCCTTGAGCCTGTGACTGAACCACCAGCTGACCTTGACCGCCTCATCCCCAT
GTACAAGGGAGCCAAGATCCAAGGAGGGATTCTTCCTGGGTCTTATCATTATCTGCATATTTCCAAACCT
GCCATCCCAACTCCTTTGAATCTACAAAGGTCACAGCCTGATTTTGGTTCAGACGTAGTGACAGGTAATG
CGAAAAAGGGGACGTACTTCCGACTATACATTAACAACTATAAGTTGGTGGAGGCCATCACGTGCTTTTC
AAAGGAGCCTTTCCCATCCTCCAACTACATCCGCTTGTTTGGACAACATGAGCAAGTCCTCAACAACCTG
TGTACTCGCTTTGATGACAAACTGATCCCAGATCTTTACAGCTACTTCACAGAGCCGTGGTGCATGGCCC
TCTTCCACGATCGTTTTATTGATCTCAAGAAAGAGTTGCGCCAAATCTTAATCTCCAAGCAGGAGGAAGA
CAAGCCTACCATGGAGGAGATAGCCTACCGGTTAGAGGAGGAAGAAATAAACCTGAATGAGAAGCCCCAG
AAATACCTCCAAAGGGTTTTTGAGGATTCCATCTACAAAAGCCTGCTGGAGAAGAGCATCCTAGATTACC
TTCATTACAACCAGTACCACCTGCCCATGTACGCATGGCCAGGCATCATTTAG

Translation (1230 aa):
MSILTSPRGKVEVVHCRRTESQDIFCIKNLVRKFTQKLFGRLNIIYLLEKANLAVTVCNDKEEIMAHSIF
LDYPNWNVAKQDNWIPLFRELDKEIPCTPLNTLFMHFFVAVDEYATGCLKEIIRTVFKAVPELYFIFLIV
PTYLSLGSTLITVFDQVGNIPCLNYNEDFAVHICHRHNHYPQLHIRKARVEDHDDLMPIFMHYDNTLKEI
YGEYFLAELIEAQDKDHHAVVCEVEGKAVGFMSVCTSVNLPLLHECFDLGPFHGFCTPHPDDILKPSREP
SLEEGEDAESQGSPKVVEEQEMAPEITQEKETETSASCEEALPTVLGLVSEERLKQDMEKNLSILSLVDE
EDVASSLSSSLLLSVESSHFRPLYLGDPIAFCIQLFCIDERYEARSLDFMSFVFSLFPGKNFCLISVPHL
TPEFVLIQNFVKVVPFNNCTLDHDLYVFHRAGLLRSITIRLAKFLDTAGVEKLVSTLLLSTKILDDLAQY
NEAGRDPDGTALQVFVAEVADQIVGIAVIRKEMDIEYIRSHYNIEDFIYFSHHQQEEHGRLNHFALNPIF
RHYTKFFLKEILRLGYKSCLYYPVYPQTREGKLQSSYSHSLTSALHYLVPVRPRRQIVYPLEKLGINAPS
KEVSKDQVSFALNHTNRKLTLEPKVTVNARIVVVGASSVGISFLETLVFCSHLKFNNLTLISTHGLPGKR
LLHNEQRKFLASDHCFNDKDYALMSLCSWVNVVVGRMTAIDRAAKQVVVSKSEIVFYDHLILCTGLQYQV
PCPTGADTEQHLTNREVLELSKQRYTGTVPSNLFILNDEEDCVRMLCWLRNSSILTEGKVIVYGNTLDAY
TTVETLLNIGMKGSGIYFVHPPTESNITCINNNDVESAVEDALSAAGVTVFHDALLAQWNHGQHPDPIYN
ACFTTSTKPIRLECSAFFSFYKKNVDYETFKAFNDACLVYDGRLVIDTTFHTNDIAIRAAGSLTKFSNRY
YSNEWTHSNFSSKEIGFQLAAAMLSLFDPTLEPVTEPPADLDRLIPMYKGAKIQGGILPGSYHYLHISKP
AIPTPLNLQRSQPDFGSDVVTGNAKKGTYFRLYINNYKLVEAITCFSKEPFPSSNYIRLFGQHEQVLNNL
CTRFDDKLIPDLYSYFTEPWCMALFHDRFIDLKKELRQILISKQEEDKPTMEEIAYRLEEEEINLNEKPQ
KYLQRVFEDSIYKSLLEKSILDYLHYNQYHLPMYAWPGII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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